Add libgomp1 for running FastTree #126
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As far as I can tell from the official software page¹, no dependencies
are documented.
However, there are (unofficial?) Linux packages²³ that list libc6 and
libgomp1 as dependencies. Adding the latter for now since `augur tree
--method fasttree` fails with the error:
FastTreeDblMP: error while loading shared libraries: libgomp.so.1: cannot open shared object file: No such file or directory
¹ http://www.microbesonline.org/fasttree/
² https://packages.ubuntu.com/focal/fasttree
³ https://packages.debian.org/sid/science/fasttree
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Merging without review since this is a small change and testing was successful. |
This was referenced Dec 23, 2022
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Description of proposed changes
As far as I can tell from the official software page¹, no dependencies are documented.
However, there are (unofficial?) Linux packages²³ that list libc6 and libgomp1 as dependencies. Adding the latter for now since
augur tree --method fasttreefails with the error:¹ http://www.microbesonline.org/fasttree/
² https://packages.ubuntu.com/focal/fasttree
³ https://packages.debian.org/sid/science/fasttree
Related issue(s)
Testing
docker run nextstrain/base:branch-victorlin-fix-fasttree FastTreeDblMP -hshows the help output instead of the error in the original issue.