Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add libgomp1 for running FastTree #126

Merged
merged 1 commit into from
Dec 23, 2022
Merged

Add libgomp1 for running FastTree #126

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -271,6 +271,7 @@ FROM python:3.10-slim-bullseye AS final
# dos2unix: tsv-utils needs unix line endings
# jq: may be used by workflows
# less: for usability in an interactive prompt
# libgomp1: for running FastTree
# libsqlite3: for pyfastx (for Augur)
# perl: for running VCFtools
# ruby: may be used by workflows
Expand All @@ -285,6 +286,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
gzip \
jq \
less \
libgomp1 \
libsqlite3-0 \
perl \
ruby \
Expand Down