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A GISDD dengue virus 1 db #238

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GuoXiang9399
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We release a GISDD dengue virus 1 db. This db was reported in https://idpjournal.biomedcentral.com/articles/10.1186/s40249-022-01024-5.

release a GISDD dengue virus 1 db
@rneher
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rneher commented Nov 3, 2024

Hi @GuoXiang9399

thank you for your interest in contributing to the Nextclade datasets and for submitting this PR. However, looking at your tree.json, I can't find any clade or lineage annotations on your tree. Could you check whether this is the right file.

Furthermore, your README makes reference to Dengue 1-4, but I believe you have only submitted a dataset for Dengue 1, right?

best,
richard

@GuoXiang9399
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I'm really stoked to see your reply. I am gradually gaining familiarity with the data format and structure of NextStrain, while also incorporating the tree file and making necessary modifications to the readme. The dataset for dengue 1 has already been submitted, and I am nearing completion on the datasets for dengue 2-4, which will be submitted shortly.
best,
Xiang Guo

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rneher commented Nov 23, 2024

Thank you for the update. I still don't see a clade annotation on your tree. There should be a coloring that correspond to the clade nomenclature you are proposing.

like this:
image

@GuoXiang9399
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QQ20241206-204125
QQ20241206-204141
QQ20241206-204148

The update may be late, but it has arrived. I have added annotations for genotype, subgenotype, and clade on the tree.

@GuoXiang9399 GuoXiang9399 reopened this Dec 6, 2024
@GuoXiang9399
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I hope to receive your feedback soon so that I can continue improving and updating.

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