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A GISDD dengue virus 1 db #238

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A GISDD dengue virus 1 db #238

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release a GISDD dengue virus 1 db
GuoXiang9399 Oct 31, 2024
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Revert "change symbol in fasta file"
GuoXiang9399 Nov 1, 2024
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Update README.md
GuoXiang9399 Nov 6, 2024
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GuoXiang9399 Nov 6, 2024
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GuoXiang9399 Dec 6, 2024
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3 changes: 3 additions & 0 deletions data/community/GISDD/Xiang_Guo/dengue/dengue_virus_1/CHANGELOG.md
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## Unreleased

Initial release.
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# Dengue dataset

| Key | Value |
| :-- | :-- |
| name | GISDD dengue virus serotypes 1 |
| authors | Xiang Guo |
| reference | NC_002640.1 |
| workflow | http://www.bic.ac.cn/GISDD/ |
| path | `GISDD/dengue/dengue_virus_1` |


## Scope of this dataset

This dataset assigns serotype (e.g. DENV1) to dengue samples based on GISDD criteria WHO](https://idpjournal.biomedcentral.com/articles/10.1186/s40249-022-01024-5) and tree placement nearest references [KM204119 (DENV1)].

## Features

This dataset supports:

- Assignment of serotypes
- Phylogenetic placement
- Sequence quality control (QC)

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##gff-version 3
##sequence-region 1944_KM204119_Hawaii 1 1485
1944_KM204119_Hawaii feature gene 1 1485 . + . codon_start=1;gene=E;gene_name=E;
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2 changes: 2 additions & 0 deletions data/community/GISDD/Xiang_Guo/dengue/dengue_virus_1/reference.fasta
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>1944_KM204119_Hawaii
ATGCGATGCGTGGGAATAGGCAACAGAGACTTCGTGGAAGGACTGTCAGGAGCAACGTGGGTGGATGTGGTACTGGAGCATGGAAGTTGCGT-CACCACCATGGCAAAAGATAAACCAACATTGGACATTGAACTCTTGAAGACGGAGGTCACAAACCCTGCCGTCCTGCGTAAACTGTGCATTGAAGCTAAAATATCAAACACCACCACCGATTCAAGATGTCCAACACAAGGGGAAGCCACACTGGTGGAAGAACAAGACGCGAACTTCGTGTGTCGACGAACGTTTGTGGACAGAGGCTGGGGCAATGGCTGTGGGCTTTTCGGAAAAGGTAGCCTAATAACGTGTGCTAAGTTCAAGTGTGTGACAAAACTGGAAGGAAAGATTGTTCAATATGAGAACTTGAAATATTCAGTGATAGTCACCGTCCACACTGGTGACCAGCACCAGGTGGGAAATGAGACCACAGAACATGGAACAACTGCAACCATAACACCTCAAGCTCCTACGTCGGAAATACAGCTGACCGACTACGGAGCTCTTACATTGGATTGCTCACCCAGAACAGGGCTAGACTTTAATGAGATGGTGTTGTTGACAATGAAAGAAAAATCATGGCTTGTCCACAAACAATGGTTTCTAGACTTACCACTGCCCTGGACCTCGGGAGCTTCAACACCCCAAGAGACTTGGAACAGACAAGATTTGCTGGTTACATTTAAGACAGCTCATGCAAAGAAGCAGGAAGTAGTCGTACTAGGATCACAAGAAGGAGCAATGCACACTGCGTTGACCGGAGCGACAGAAATCCAARCGTCTGGAACGACAACAATTTTTGCAGGACACTTGAAATGTAGACTAAAAATGGACAAACTGACCTTAAAAGGGATGTCATATGTGATGTGCACAGGCTCATTCAAGTTAGAGAAAGAAGTGGCTGAGACCCAGCATGGAACTGTTCTAGTGCAGGTTAAATACGAAGGAACAGATGCACCATGCAAGATCCCCTTTTCGACCCAAGATGAGAAAGGAGTAACCCAGAATGGGAGATTGATAACAGCCAACCCCATAGTCACTGACAAAGAAAAACCAGTCAACATTGAGGCAGAACCACCTTTTGGTGAGAGTTACATCGTGGTAGGAGCAGGTGAAAAAGCTTTGAAACTAAGCTGGTTCAAGAAAGGAAGCAGCATAGGGAAAATGCTTGAAGCAACTGCCCGAGGAGCACGAAGGATGGCCATCCTAGGAGACACCGCATGGGACTTCGGTTCTATAGGAGGAGTGTTCACGTCTGTGGGAAAACTGGTACACCAGATTTTTGGAACTGCATATGGAGTTTTGTTCAGCGGTGTTTCCTGGACTATGAAAATAGGAATAGGGATTCTGCTGACATGGCTAGGATTAAATTCAAGGAGCACGTCCCTTTCGATGACGTGCATTGCAGTTGGCATGGTTACACTGTACCTAGGAGTCATGGTTCAGGCG--
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