Deploy private.nextflu.org #15
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| name: Deploy private.nextflu.org | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| aws_batch_job_id: | |
| description: The AWS Batch Job ID for the private nextflu seasonal flu builds. | |
| type: string | |
| required: true | |
| deploy_to_staging: | |
| description: Deploy to the staging website at https://staging-private-nextflu.netlify.app | |
| type: boolean | |
| required: true | |
| env: | |
| # Everything should run from within the nextflu/auspice directory | |
| # https://github.com/blab/nextflu/tree/e672eba6d2e0ad5e10b0775f94fc87ffc75d6005/auspice | |
| WORKING_DIR: auspice | |
| AUSPICE_DIR: auspice-who | |
| defaults: | |
| run: | |
| # Cannot use contexts or expressions for this top level defaults, so must | |
| # hard-code the path instead of using env.WORKING_DIR | |
| # https://docs.github.com/en/actions/using-jobs/setting-default-values-for-jobs#setting-default-shell-and-working-directory | |
| working-directory: auspice | |
| jobs: | |
| deploy_to_netlify: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| repository: blab/nextflu | |
| sparse-checkout: | | |
| ${{ env.WORKING_DIR }} | |
| - uses: ruby/setup-ruby@v1 | |
| with: | |
| ruby-version: '2.3.7' | |
| bundler-cache: true | |
| # `uses` does not respect the default working-directory | |
| # Luckily, the setup-ruby action has a `working-directory` input | |
| # https://github.com/ruby/setup-ruby#working-directory | |
| # | |
| # Must be set to access the Gemfile.lock file in the auspice directory | |
| # https://github.com/blab/nextflu/blob/12c5645d990f53c553d6f04e293e2f12b4ad3575/auspice/Gemfile.lock | |
| working-directory: ${{ env.WORKING_DIR }} | |
| - uses: nextstrain/.github/actions/setup-nextstrain-cli@master | |
| - name: Download builds from AWS Batch | |
| run: | | |
| nextstrain build \ | |
| --aws-batch \ | |
| --attach "$AWS_BATCH_JOB_ID" \ | |
| --download "$AUSPICE_DIR/*.json" \ | |
| --no-logs \ | |
| . | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| AWS_BATCH_JOB_ID: ${{ inputs.aws_batch_job_id }} | |
| - name: Move Auspice JSONs | |
| run: | | |
| mkdir data | |
| mv "$AUSPICE_DIR"/*.json data/ | |
| rm -r "$AUSPICE_DIR" | |
| - name: Create index files | |
| run: python provision_directories.py | |
| - name: Build site | |
| run: bundle exec jekyll build | |
| - uses: actions/setup-node@v3 | |
| with: | |
| # Minimum node version to install Netlify CLI | |
| # https://docs.netlify.com/cli/get-started/#installation | |
| node-version: 16 | |
| - name: Install Netlify CLI | |
| run: npm install netlify-cli -g | |
| - name: Deploy to Netlify | |
| run: netlify deploy --build --prod | |
| env: | |
| NETLIFY_SITE_ID: ${{ inputs.deploy_to_staging && secrets.NETLIFY_SITE_ID_STAGING || secrets.NETLIFY_SITE_ID }} | |
| NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} |