Keep formatting from Python's JSON module

Keeps the formatting generated by Python's JSON module when writing out new Auspice config JSONs with color scales.
nextstrain · Sep 19, 2023 · 68dbe2c · 68dbe2c
1 parent 6051063
commit 68dbe2c
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Showing 3 changed files with 137 additions and 38 deletions.
diff --git a/profiles/nextflu-private/h1n1pdm/na/auspice_config.json b/profiles/nextflu-private/h1n1pdm/na/auspice_config.json
@@ -1,10 +1,22 @@
 {
   "title": "Real-time tracking of influenza A/H1N1pdm evolution",
   "maintainers": [
-    {"name": "Jover Lee", "url": "https://bedford.io/team/jover-lee/"},
-    {"name": "John Huddleston", "url": "https://bedford.io/team/john-huddleston/"},
-    {"name": "Richard Neher", "url": "https://neherlab.org/richard-neher.html"},
-    {"name": "Trevor Bedford", "url": "https://bedford.io/team/trevor-bedford/"}
+    {
+      "name": "Jover Lee",
+      "url": "https://bedford.io/team/jover-lee/"
+    },
+    {
+      "name": "John Huddleston",
+      "url": "https://bedford.io/team/john-huddleston/"
+    },
+    {
+      "name": "Richard Neher",
+      "url": "https://neherlab.org/richard-neher.html"
+    },
+    {
+      "name": "Trevor Bedford",
+      "url": "https://bedford.io/team/trevor-bedford/"
+    }
   ],
   "data_provenance": [
     {
@@ -28,11 +40,26 @@
       "title": "Clade",
       "type": "categorical",
       "scale": [
-        ["6B.1A.5a", "#57a5d7"],
-        ["5a.1", "#3e59cf"],
-        ["5a.2", "#705c94"],
-        ["5a.2a", "#e39b39"],
-        ["5a.2a.1", "#dfd24e"]
+        [
+          "6B.1A.5a",
+          "#57a5d7"
+        ],
+        [
+          "5a.1",
+          "#3e59cf"
+        ],
+        [
+          "5a.2",
+          "#705c94"
+        ],
+        [
+          "5a.2a",
+          "#e39b39"
+        ],
+        [
+          "5a.2a.1",
+          "#dfd24e"
+        ]
       ]
     },
     {
@@ -163,4 +190,4 @@
     "entropy",
     "frequencies"
   ]
-}
+}
diff --git a/profiles/nextflu-private/h3n2/na/auspice_config.json b/profiles/nextflu-private/h3n2/na/auspice_config.json
@@ -1,10 +1,22 @@
 {
   "title": "Real-time tracking of influenza A/H3N2 evolution",
   "maintainers": [
-    {"name": "Jover Lee", "url": "https://bedford.io/team/jover-lee/"},
-    {"name": "John Huddleston", "url": "https://bedford.io/team/john-huddleston/"},
-    {"name": "Richard Neher", "url": "https://neherlab.org/richard-neher.html"},
-    {"name": "Trevor Bedford", "url": "https://bedford.io/team/trevor-bedford/"}
+    {
+      "name": "Jover Lee",
+      "url": "https://bedford.io/team/jover-lee/"
+    },
+    {
+      "name": "John Huddleston",
+      "url": "https://bedford.io/team/john-huddleston/"
+    },
+    {
+      "name": "Richard Neher",
+      "url": "https://neherlab.org/richard-neher.html"
+    },
+    {
+      "name": "Trevor Bedford",
+      "url": "https://bedford.io/team/trevor-bedford/"
+    }
   ],
   "data_provenance": [
     {
@@ -28,22 +40,70 @@
       "title": "Clade",
       "type": "categorical",
       "scale": [
-        ["1", "#571EA2"],
-        ["1a", "#4334BF"],
-        ["1a.1", "#3F55CE"],
-        ["2", "#4376CD"],
-        ["2a", "#4C91C0"],
-        ["2a.1", "#59A4A9"],
-        ["2a.1a", "#6AB18F"],
-        ["2a.1b", "#7FB975"],
-        ["2a.2", "#97BD5F"],
-        ["2a.3", "#AFBD4F"],
-        ["2a.3a", "#C7B944"],
-        ["2a.3a.1", "#D9AD3D"],
-        ["2a.3b", "#E49838"],
-        ["2b", "#E67932"],
-        ["2c", "#E1512A"],
-        ["2d", "#DB2823"]
+        [
+          "1",
+          "#571EA2"
+        ],
+        [
+          "1a",
+          "#4334BF"
+        ],
+        [
+          "1a.1",
+          "#3F55CE"
+        ],
+        [
+          "2",
+          "#4376CD"
+        ],
+        [
+          "2a",
+          "#4C91C0"
+        ],
+        [
+          "2a.1",
+          "#59A4A9"
+        ],
+        [
+          "2a.1a",
+          "#6AB18F"
+        ],
+        [
+          "2a.1b",
+          "#7FB975"
+        ],
+        [
+          "2a.2",
+          "#97BD5F"
+        ],
+        [
+          "2a.3",
+          "#AFBD4F"
+        ],
+        [
+          "2a.3a",
+          "#C7B944"
+        ],
+        [
+          "2a.3a.1",
+          "#D9AD3D"
+        ],
+        [
+          "2a.3b",
+          "#E49838"
+        ],
+        [
+          "2b",
+          "#E67932"
+        ],
+        [
+          "2c",
+          "#E1512A"
+        ],
+        [
+          "2d",
+          "#DB2823"
+        ]
       ]
     },
     {
@@ -111,7 +171,7 @@
       "title": "Country",
       "type": "categorical"
     },
-     {
+    {
       "key": "division",
       "title": "Division",
       "type": "categorical"
@@ -168,4 +228,4 @@
     "entropy",
     "frequencies"
   ]
-}
+}
diff --git a/profiles/nextflu-private/vic/na/auspice_config.json b/profiles/nextflu-private/vic/na/auspice_config.json
@@ -1,10 +1,22 @@
 {
   "title": "Real-time tracking of influenza B/Vic evolution",
   "maintainers": [
-    {"name": "Jover Lee", "url": "https://bedford.io/team/jover-lee/"},
-    {"name": "John Huddleston", "url": "https://bedford.io/team/john-huddleston/"},
-    {"name": "Richard Neher", "url": "https://neherlab.org/richard-neher.html"},
-    {"name": "Trevor Bedford", "url": "https://bedford.io/team/trevor-bedford/"}
+    {
+      "name": "Jover Lee",
+      "url": "https://bedford.io/team/jover-lee/"
+    },
+    {
+      "name": "John Huddleston",
+      "url": "https://bedford.io/team/john-huddleston/"
+    },
+    {
+      "name": "Richard Neher",
+      "url": "https://neherlab.org/richard-neher.html"
+    },
+    {
+      "name": "Trevor Bedford",
+      "url": "https://bedford.io/team/trevor-bedford/"
+    }
   ],
   "data_provenance": [
     {
@@ -99,7 +111,7 @@
       "title": "Country",
       "type": "categorical"
     },
-     {
+    {
       "key": "division",
       "title": "Division",
       "type": "categorical"
@@ -156,4 +168,4 @@
     "entropy",
     "frequencies"
   ]
-}
+}