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Add genotype calls via Nextclade tree to ingest/phylo builds [#2] #11

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merged 1 commit into from
Aug 26, 2024

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genehack
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@genehack genehack commented Aug 5, 2024

Description of proposed changes

Adds steps to run Nextclade in the ingest build and merge the results into the metadata so that the phylogenetic build can do coloring by Nextclade-assigned genotype.

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#2

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@genehack genehack mentioned this pull request Aug 5, 2024
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@genehack genehack force-pushed the use-nextclade-for-genotypes-2 branch from 4f85ae3 to c9061d4 Compare August 22, 2024 22:44
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Updated to use numeric clade names; re-uploaded to staging for preview.

@genehack genehack requested a review from joverlee521 August 22, 2024 22:45
@genehack genehack force-pushed the use-nextclade-for-genotypes-2 branch from c9061d4 to 4f85ae3 Compare August 23, 2024 18:57
@genehack genehack merged commit 525cb86 into main Aug 26, 2024
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@genehack genehack deleted the use-nextclade-for-genotypes-2 branch August 26, 2024 18:10
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