update tests and snaps

nf-core · Nov 8, 2024 · 9f65e57 · 9f65e57
1 parent 17ee8b6
commit 9f65e57
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Showing 10 changed files with 13 additions and 17 deletions.
diff --git a/tests/test.nf.test b/tests/test.nf.test
@@ -1,6 +1,6 @@
 nextflow_pipeline {
 
-    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE"
+    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE (test)"
     script "../main.nf"
     profile "+test"
     tag "test"

diff --git a/tests/test.nf.test.snap b/tests/test.nf.test.snap
@@ -140,7 +140,6 @@
                 "treatment_mCherry_hND6_sample_number.mh.all.v2022.1.Mm.symbols.ranked_gene_list_hND6_versus_mCherry.tsv:md5,30cfd08715168536aab8a088009d3bc4",
                 "treatment_mCherry_hND6_sample_number.mh.all.v2022.1.Mm.symbols.ranked_list_corr_2.png:md5,07e580fa86de237281de6a59b4d84716",
                 "app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
-                "data.rds:md5,deed018597462c275329a22aba95345f",
                 "versions.yml:md5,892774f9d56ba10c8646736b7f777ecc",
                 "Mus_musculus.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
                 "treatment_mCherry_hND6_.deseq2.results.tsv:md5,42ad391a5d3b2e4e7931af3088cc6400",
@@ -155,6 +154,6 @@
             "nf-test": "0.9.0",
             "nextflow": "24.10.0"
         },
-        "timestamp": "2024-11-07T17:19:02.508819768"
+        "timestamp": "2024-11-08T14:00:03.015341477"
     }
 }
diff --git a/tests/test_affy.nf.test b/tests/test_affy.nf.test
@@ -1,6 +1,6 @@
 nextflow_pipeline {
 
-    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE"
+    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE (affy)"
     script "../main.nf"
     profile "+test_affy"
     tag "affy"

diff --git a/tests/test_affy.nf.test.snap b/tests/test_affy.nf.test.snap
@@ -61,6 +61,8 @@
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_FATTY_ACID_METABOLISM.tsv",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_G2M_CHECKPOINT.html",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_G2M_CHECKPOINT.tsv",
+                "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.html",
+                "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.tsv",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL2_STAT5_SIGNALING.html",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL2_STAT5_SIGNALING.tsv",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL6_JAK_STAT3_SIGNALING.html",
@@ -87,8 +89,6 @@
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_NOTCH_SIGNALING.tsv",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_OXIDATIVE_PHOSPHORYLATION.html",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_OXIDATIVE_PHOSPHORYLATION.tsv",
-                "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.html",
-                "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.tsv",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_PEROXISOME.html",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_PEROXISOME.tsv",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_PROTEIN_SECRETION.html",
@@ -167,6 +167,7 @@
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_ESTROGEN_RESPONSE_EARLY.tsv:md5,695b5bd61210e9fd4e76993cee00c63d",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_FATTY_ACID_METABOLISM.tsv:md5,cb069d05610994d1e43ea84de165bcd0",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_G2M_CHECKPOINT.tsv:md5,09eba22af78006f69a9d0cb1bee27331",
+                "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.tsv:md5,08c50f431cee394c0280f41345a07d96",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL2_STAT5_SIGNALING.tsv:md5,38824ee08434a02049cf7f57c43545d5",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL6_JAK_STAT3_SIGNALING.tsv:md5,ab80e349a52b1b17d350d488d552f2b6",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_INFLAMMATORY_RESPONSE.tsv:md5,99983d81cd0ee6bc9c5e078ea311147c",
@@ -180,7 +181,6 @@
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_MYOGENESIS.tsv:md5,332f9386161436cd69d4b830e0f392d6",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_NOTCH_SIGNALING.tsv:md5,53bc5acac191f31dcdbfe62fcf396358",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_OXIDATIVE_PHOSPHORYLATION.tsv:md5,faab3d7cea1ff32b5c224587246ad34e",
-                "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.tsv:md5,4070abb7bce1b665cae361d1fafadc4a",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_PEROXISOME.tsv:md5,66a120807b07d920c876b65b3925264c",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_PROTEIN_SECRETION.tsv:md5,d13300c61a1e99a0b05ef18fac74c42d",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY.tsv:md5,33429d1e3f2342c6c0e7b499035bd8da",
@@ -193,7 +193,6 @@
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.gene_set_sizes.tsv:md5,77b53b0ca686ede9fe15ca448340f9f5",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.ranked_gene_list_lesional_versus_uninvolved.tsv:md5,72dfaeff534ba9a2b32f63524e835dc4",
                 "app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
-                "data.rds:md5,12443200d8ebe6a8e9d5409d5592dbc9",
                 "versions.yml:md5,892774f9d56ba10c8646736b7f777ecc",
                 "hgu133plus2.annotation.tsv:md5,f2b82ef12b2a2e8e575de06766583d96",
                 "phenotype_uninvolved_lesional.limma.results.tsv:md5,686e871be0f1b435e161f84f6518cfc3",
@@ -214,6 +213,6 @@
             "nf-test": "0.9.0",
             "nextflow": "24.10.0"
         },
-        "timestamp": "2024-11-07T18:45:19.680294927"
+        "timestamp": "2024-11-08T14:04:25.71001709"
     }
 }
diff --git a/tests/test_maxquant.nf.test b/tests/test_maxquant.nf.test
@@ -1,6 +1,6 @@
 nextflow_pipeline {
 
-    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE"
+    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE (maxquant)"
     script "../main.nf"
     profile "+test_maxquant"
     tag "maxquant"

diff --git a/tests/test_nogtf.nf.test b/tests/test_nogtf.nf.test
@@ -1,6 +1,6 @@
 nextflow_pipeline {
 
-    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE"
+    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE (nogtf)"
     script "../main.nf"
     profile "+test_nogtf"
     tag "nogtf"

diff --git a/tests/test_nogtf.nf.test.snap b/tests/test_nogtf.nf.test.snap
@@ -69,7 +69,6 @@
                 "treatment_mCherry_hND6_.deseq2.dispersion.png:md5,ed14d196fadbe460d560982ef1e2ac91",
                 "treatment_mCherry_hND6_sample_number.deseq2.dispersion.png:md5,d0f07f97c7f5c660b173d85b85ed50b9",
                 "app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
-                "data.rds:md5,341874520c0d16c2eca5388e3585c6b2",
                 "versions.yml:md5,892774f9d56ba10c8646736b7f777ecc",
                 "treatment_mCherry_hND6_.deseq2.results.tsv:md5,d9e894aeb89aa5bc79bf7ce31304d7c0",
                 "treatment_mCherry_hND6_.deseq2.results_filtered.tsv:md5,630820ec91287d8bcb2e5882431c09c3",
@@ -83,6 +82,6 @@
             "nf-test": "0.9.0",
             "nextflow": "24.10.0"
         },
-        "timestamp": "2024-11-07T16:59:16.942778374"
+        "timestamp": "2024-11-08T14:08:09.370720729"
     }
 }
diff --git a/tests/test_rnaseq_limma.nf.test b/tests/test_rnaseq_limma.nf.test
@@ -1,6 +1,6 @@
 nextflow_pipeline {
 
-    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE"
+    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE (limma)"
     script "../main.nf"
     profile "+test_rnaseq_limma"
     tag "rnaseq_limma"

diff --git a/tests/test_soft.nf.test b/tests/test_soft.nf.test
@@ -1,6 +1,6 @@
 nextflow_pipeline {
 
-    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE"
+    name "Test Workflow main.nf - DIFFERENTIALABUNDANCE (soft)"
     script "../main.nf"
     profile "+test_soft"
     tag "soft"

diff --git a/tests/test_soft.nf.test.snap b/tests/test_soft.nf.test.snap
@@ -59,7 +59,6 @@
                 "versions.yml:md5,9c47cbf6f2f30c711eb57fff84ea3736",
                 "phenotype_uninvolved_lesional.limma.mean_difference.png:md5,570bc62fbad15b7b25eaea786a416ace",
                 "app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
-                "data.rds:md5,71508ad31e0fb1b69ed569c85470f660",
                 "versions.yml:md5,892774f9d56ba10c8646736b7f777ecc",
                 "normalised.annotation.tsv:md5,40300ae222ae35fa54daf10a1b86e830",
                 "phenotype_uninvolved_lesional.limma.results.tsv:md5,2cfa653fffb034be4b82abf306c87bc5",
@@ -71,6 +70,6 @@
             "nf-test": "0.9.0",
             "nextflow": "24.10.0"
         },
-        "timestamp": "2024-11-07T16:45:37.804157158"
+        "timestamp": "2024-11-08T14:12:26.809162392"
     }
 }