Linting fix

nf-core · Oct 31, 2023 · 78b06b1 · 78b06b1
1 parent c1d4e47
commit 78b06b1
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Showing 5 changed files with 4 additions and 5 deletions.
diff --git a/modules/local/cellrangerarc/Dockerfile b/modules/local/cellrangerarc/Dockerfile
@@ -25,4 +25,4 @@ RUN \
     tar -xzvf cellranger-arc-$CELLRANGER_ARC_VER.tar.gz && \
     export PATH=/opt/cellranger-arc-$CELLRANGER_ARC_VER:$PATH && \
     ln -s /opt/cellranger-arc-$CELLRANGER_ARC_VER/cellranger-arc /usr/bin/cellranger-arc && \
-    rm -rf /opt/cellranger-arc-$CELLRANGER_ARC_VER.tar.gz
+    rm -rf /opt/cellranger-arc-$CELLRANGER_ARC_VER.tar.gz
diff --git a/modules/local/cellrangerarc/mkgtf/main.nf b/modules/local/cellrangerarc/mkgtf/main.nf
@@ -33,4 +33,4 @@ process CELLRANGERARC_MKGTF {
         cellrangerarc: \$(echo \$( cellranger-arc --version 2>&1) | sed 's/^.*[^0-9]\\([0-9]*\\.[0-9]*\\.[0-9]*\\).*\$/\\1/' )
     END_VERSIONS
     """
-}
+}
diff --git a/modules/local/cellrangerarc/mkref/main.nf b/modules/local/cellrangerarc/mkref/main.nf
@@ -36,4 +36,4 @@ process CELLRANGERARC_MKREF {
         cellrangerarc: \$(echo \$( cellranger-arc --version 2>&1) | sed 's/^.*[^0-9]\\([0-9]*\\.[0-9]*\\.[0-9]*\\).*\$/\\1/' )
     END_VERSIONS
     """
-}
+}
diff --git a/modules/local/generate_cellranger_mkref_config.nf b/modules/local/generate_cellranger_mkref_config.nf
@@ -8,7 +8,7 @@ process CELLRANGERARC_GENERATECONFIG {
         'quay.io/biocontainers/python:3.8.3' }"
 
     input:
-    val(fasta) 
+    val(fasta)
     val(gtf)
     val(motifs)
 

diff --git a/modules/local/mtx_to_seurat.nf b/modules/local/mtx_to_seurat.nf
@@ -3,7 +3,6 @@ process MTX_TO_SEURAT {
     label 'process_medium'
 
     conda "r-seurat"
-
     container "nf-core/seurat:4.3.0"
 
     input:
-Original file line number
+Diff line change
@@ Expand Up / @@ -33,4 +33,4 @@ process CELLRANGERARC_MKGTF { @@
             cellrangerarc: \$(echo \$( cellranger-arc --version 2>&1) | sed 's/^.*[^0-9]\\([0-9]*\\.[0-9]*\\.[0-9]*\\).*\$/\\1/' )
         END_VERSIONS
         """
-    }
+    }