not compress h5ad output

nf-core · Oct 30, 2024 · 98af608 · 98af608
1 parent 187dbf6
commit 98af608
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/modules/local/templates/mtx_to_h5ad_alevin.py b/modules/local/templates/mtx_to_h5ad_alevin.py
@@ -73,7 +73,7 @@ def input_to_adata(
     adata.var_names_make_unique()
 
     # write results
-    adata.write_h5ad(f"{output}", compression="gzip")
+    adata.write_h5ad(f"{output}")
     print(f"Wrote h5ad file to {output}")
 
 #

diff --git a/modules/local/templates/mtx_to_h5ad_cellranger.py b/modules/local/templates/mtx_to_h5ad_cellranger.py
@@ -73,7 +73,7 @@ def input_to_adata(
     adata.var_names_make_unique()
 
     # write results
-    adata.write_h5ad(f"{output}", compression="gzip")
+    adata.write_h5ad(f"{output}")
     print(f"Wrote h5ad file to {output}")
 
     # dump versions

diff --git a/modules/local/templates/mtx_to_h5ad_star.py b/modules/local/templates/mtx_to_h5ad_star.py
@@ -69,7 +69,7 @@ def input_to_adata(
     adata.var = adata.var.drop("gene_ids", axis=1)
 
     # write results
-    adata.write_h5ad(f"{output}", compression="gzip")
+    adata.write_h5ad(f"{output}")
     print(f"Wrote h5ad file to {output}")
 
 #