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Issues: nf-core/tools

[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
Open
Download: Fix support for Seqera Community Containers
#3179 opened Sep 24, 2024 by MatthiasZepper
Open 5
Renovate Dashboard 🤖
#2596 opened Dec 19, 2023 by renovate bot
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259 Open 825 Closed
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Issues list

Make main default for all nf-core repos
#3316 opened Dec 3, 2024 by mashehu
Add opt-in option to template features enhancement
#3315 opened Dec 3, 2024 by mirpedrol
3 tasks
3.2
Automated suggestions for semantic release number enhancement
#3314 opened Dec 3, 2024 by pinin4fjords
Pipeline schema build help modal loses text area focus bug Something isn't working
#3312 opened Dec 2, 2024 by swingingsimian
1
Conda install nf-core cli on mac arm64 fails bug Something isn't working
#3303 opened Nov 28, 2024 by swingingsimian
nf-core subworkflows lint nf-test directory is missing rule is inconsistent bug Something isn't working
#3297 opened Nov 25, 2024 by edmundmiller
@edmundmiller
1
Lint pipelines nextflow schema against the meta schema enhancement pipeline-testing schema template nf-core pipeline/component template
#3288 opened Nov 20, 2024 by mirpedrol
5 tasks
Documentation shows the old commands without pipelines prefix bug Something isn't working documentation
#3287 opened Nov 20, 2024 by mirpedrol
Values in comments are read when creating template for meta.yml from input options bug Something isn't working
#3286 opened Nov 18, 2024 by zachary-foster
download pipelines fails with some seqera containers bug Something isn't working download nf-core download
#3285 opened Nov 18, 2024 by znorgaard
@MatthiasZepper
4
linting fails to execute if "----" present in module patch diff file bug Something isn't working
#3281 opened Nov 15, 2024 by znorgaard
Allow skipping linting of specific subworkflows enhancement good-first-issue linting
#3278 opened Nov 14, 2024 by mirpedrol
Lint that module nf-tests use a single config with sourcing the args from params enhancement
#3277 opened Nov 14, 2024 by mahesh-panchal
Single qutation mark ' in a comment makes AWS release full test break bug Something isn't working
#3273 opened Nov 7, 2024 by jannikseidelQBiC
2
Phase out the when directive enhancement
#3270 opened Nov 4, 2024 by nictru
Update base to use new previous task
#3269 opened Oct 31, 2024 by edmundmiller
Running prettier on new pipeline during pipelines create fails silently bug Something isn't working
#3266 opened Oct 30, 2024 by awgymer
CI Runs failing due to (potential) bug in utils method for fetching repo releases bug Something isn't working
#3264 opened Oct 30, 2024 by awgymer
nf-core pipeline lint gives cryptic prettier error message bug Something isn't working
#3262 opened Oct 29, 2024 by marrip
7
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3259 opened Oct 29, 2024 by Joon-Klaps
@Joon-Klaps
Provide novel tooling for regulatory needs enhancement regulatory
#3258 opened Oct 29, 2024 by apeltzer
1
Pipeline creation should specify branch name when initialising git repository enhancement
#3254 opened Oct 28, 2024 by alexlyttle
Modules meta.yml differentiate between tuple and single element channels bug Something isn't working linting modules Related to tools for working with DSL2 modules
#3248 opened Oct 24, 2024 by mirpedrol
5 tasks
nf-core pipelines bump-version doesn't consider skipped features bug Something isn't working
#3245 opened Oct 24, 2024 by mashehu
Adopt nf-test sharding
#3243 opened Oct 23, 2024 by edmundmiller
3
ProTip! Exclude everything labeled bug with -label:bug.