Added new 'response to chemical' term for GWAS

[ar-ibrahim]

• issue New term request: 'response to apixaban' #274
• @rays22 does the orcid ID represent the creators of the pattern or the term?

[ar-ibrahim]

@rays22 After updating the chebi slim and importing the chebi term for the new term request, there's a new QC error unrelated to my issue:

ERROR	misused_obsolete_label	OBA:0006023	rdfs:label	obsolete proline oxidase activity rate
ERROR	misused_obsolete_label	OBA:1000857	rdfs:label	obsolete proline oxidase activity quality

What are your thoughts on this?

[rays22]

ERROR	misused_obsolete_label	OBA:0006023	rdfs:label	obsolete proline oxidase activity rate
ERROR	misused_obsolete_label	OBA:1000857	rdfs:label	obsolete proline oxidase activity quality

@ar-ibrahim ,
In cases like this, when the GO term component becomes obsolete, you need to find an appropriate replacement, or do a manual term edit in Protege.
In the present case, there is a replacement suggested by GO for GO:0051699: GO:0004657 proline dehydrogenase activity. Replace the occurrences of GO:0051699 with GO:0004657 in entity_attribute.tsv.

[rays22]

• does the orcid ID represent the creators of the pattern or the term?

It is the ORCID of the contributor of the term.

[rays22]

Replace the obsolete GO component term in entity_attribute_part_of.tsv and entity_attribute.tsv and it will be fine.