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Added new 'response to chemical' term for GWAS #275

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merged 6 commits into from
Aug 3, 2023
Merged

Added new 'response to chemical' term for GWAS #275

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51bfed1
Added new 'response to chemical' term for GWAS
ar-ibrahim Jul 31, 2023
b717463
Update imports + definitions.owl
ar-ibrahim Aug 1, 2023
f1badae
Update obsoletes.owl
ar-ibrahim Aug 1, 2023
435ee73
Updated obsolete GO entity terms
ar-ibrahim Aug 3, 2023
7b04975
Updated GO import for QC fix
ar-ibrahim Aug 3, 2023
2e284fd
Update dosdp patterns file
ar-ibrahim Aug 3, 2023
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4 changes: 2 additions & 2 deletions src/ontology/components/obsoletes.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/oba/components/obsoletes.owl>
<http://purl.obolibrary.org/obo/oba/releases/2023-07-18/components/obsoletes.owl>
Annotation(owl:versionInfo "2023-07-18")
<http://purl.obolibrary.org/obo/oba/releases/2023-08-03/components/obsoletes.owl>
Annotation(owl:versionInfo "2023-08-03")

Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0000037>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0000039>))
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4 changes: 2 additions & 2 deletions src/ontology/components/synonyms.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/oba/components/synonyms.owl>
<http://purl.obolibrary.org/obo/oba/releases/2023-07-18/components/synonyms.owl>
Annotation(owl:versionInfo "2023-07-18")
<http://purl.obolibrary.org/obo/oba/releases/2023-08-03/components/synonyms.owl>
Annotation(owl:versionInfo "2023-08-03")

Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0002546>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0002565>))
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1 change: 1 addition & 0 deletions src/ontology/imports/go_terms.txt
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@@ -1,2 +1,3 @@
GO:0016485
GO:0042627
GO:0004657
10,753 changes: 5,428 additions & 5,325 deletions src/ontology/imports/merged_import.owl
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2 changes: 1 addition & 1 deletion src/patterns/data/default/entity_attribute.tsv
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Expand Up @@ -3930,7 +3930,7 @@ OBA:0006019 GO:0004511 tyrosine 3-monooxygenase activity PATO:0000161 rate
OBA:0006020 UBERON:0004784 heart ventricle wall PATO:0000915 thickness
OBA:0006021 UBERON:0002094 interventricular septum PATO:0000915 thickness
OBA:0006022 UBERON:0009024 adrenal gland X zone PATO:0000117 size
OBA:0006023 GO:0051699 proline oxidase activity PATO:0000161 rate
OBA:0006023 GO:0004657 proline dehydrogenase activity PATO:0000161 rate
OBA:0006024 UBERON:0002190 subcutaneous adipose tissue PATO:0002037 degeneration
OBA:0006025 GO:0004743 pyruvate kinase activity PATO:0000161 rate
OBA:0006026 GO:0002185 creatine kinase complex PATO:0000070 amount
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2 changes: 1 addition & 1 deletion src/patterns/data/default/entity_attribute_part_of.tsv
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Expand Up @@ -3099,7 +3099,7 @@ OBA:1000853 GO:0007538 primary sex determination PATO:0000001 quality
OBA:1000854 GO:0097205 renal filtration PATO:0000001 quality
OBA:1000855 GO:0060117 auditory receptor cell development PATO:0000001 quality
OBA:1000856 NBO:0000557 short term spatial memory PATO:0000001 quality
OBA:1000857 GO:0051699 proline oxidase activity PATO:0000001 quality
OBA:1000857 GO:0004657 proline dehydrogenase activity PATO:0000001 quality
OBA:1000858 NBO:0000556 spatial memory PATO:0000001 quality
OBA:1000860 GO:0033316 meiotic spindle assembly checkpoint PATO:0000001 quality
OBA:1000861 NBO:0000223 contextual conditioning behavior PATO:0000001 quality
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1 change: 1 addition & 0 deletions src/patterns/data/default/response_to_chemical_stimulus_trait.tsv
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Expand Up @@ -112,3 +112,4 @@ OBA:2040141 CHEBI:9943 venlafaxine https://orcid.org/0000-0001-8314-2140|https:
OBA:2040162 CHEBI:6809 methamphetamine https://orcid.org/0000-0001-8314-2140|https://orcid.org/0000-0002-7073-9172
OBA:2040163 CHEBI:27958 cocaine https://orcid.org/0000-0001-8314-2140|https://orcid.org/0000-0002-7073-9172
OBA:2040164 CHEBI:18723 nicotine https://orcid.org/0000-0001-8314-2140|https://orcid.org/0000-0002-7073-9172
OBA:2050328 CHEBI:72296 apixaban https://orcid.org/0000-0001-6757-4744
38 changes: 24 additions & 14 deletions src/patterns/definitions.owl
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