CNAG Biomedical Informatics

All

8 repositories

convert-pheno
Public
A software toolkit for the interconversion of standard data models for phenotypic data
csv convert biomedical-informatics ehr beacon health-data cdisc redcap bff omop
Perl
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Artistic License 2.0
•1•9•1•0•Updated Nov 29, 2024Nov 29, 2024
pheno-ranker-app
Public
A standalone desktop application for phenotype ranking using the Pheno-Ranker tool, built with Python and CustomTkinter.
Python
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MIT License
•0•1•0•0•Updated Nov 29, 2024Nov 29, 2024
pheno-ranker
Public
Pheno-Ranker is a tool for comparing phenotypic data structured in JSON/YAML format, such as Beacon v2 Models or Phenopackets v2.
yaml json bioinformatics csv genomics qrcode vcf biomedical-informatics semantic-similarity ehr
Perl
•
Artistic License 2.0
•1•4•0•0•Updated Nov 28, 2024Nov 28, 2024
convert-pheno-ui
Public
The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data
convert cdisc phenopackets omop-cdm beacon-friendly-format pheno-clinical
FreeMarker
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GNU General Public License v3.0
•1•4•2•43•Updated Nov 22, 2024Nov 22, 2024
omop-cdm-2-beacon-v2
Public
Jupyter Notebook
•0•0•0•0•Updated Nov 9, 2024Nov 9, 2024
pheno-ranker-ui
Public
The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2
json r shiny semantic-similarity data-exploration clinical-data semantic-similarity-measures beacon-v2 phenopackets-v2
R
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GNU General Public License v3.0
•0•2•0•31•Updated Nov 7, 2024Nov 7, 2024
.github
Public
Repository for modifying the organization's profile page
health-data
Makefile
•0•0•0•0•Updated Sep 29, 2024Sep 29, 2024
bioconda-recipes
Public
Conda recipes for the bioconda channel.
Shell
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MIT License
•3.3k•0•0•0•Updated Sep 17, 2023Sep 17, 2023