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    14 repositories

    • DESIGNER-v2

      Public
      Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2
      C
      •
      Other
      •2•18•4•0•Updated Dec 10, 2024Dec 10, 2024

    • RICE

      Public
      Rotational Invariants of the Cumulant Expansion toolbox
      MATLAB
      •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

    • SMI

      Public
      Toolbox for parameter estimation of the Standard Model of diffusion in white matter
      machine-learningparameter-estimationdiffusion-mribiophysical-modeling
      MATLAB
      •0•20•0•0•Updated Jun 24, 2024Jun 24, 2024

    • DESIGNER-v1

      Public archive
      Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
      MATLAB
      •
      Other
      •23•51•2•2•Updated Mar 5, 2024Mar 5, 2024

    • Standard-Model-validation-using-3d-EM

      Public
      Validation of Standard Model microstructure metrics using 3D electron microscopy
      MATLAB
      •
      Other
      •0•0•0•0•Updated Mar 1, 2024Mar 1, 2024

    • monte-carlo-simulation-3D-RMS

      Public
      Monte Carlo simulations in Lee, et al., Commun Biol 2020 and J Neurosci Methods 2020
      MATLAB
      •
      Other
      •3•8•0•0•Updated Feb 12, 2024Feb 12, 2024

    • monte-carlo-simulation-recipes

      Public
      Recipes of Monte Carlo simulations in Fieremans and Lee, NeuroImage 2018
      C++
      •
      Other
      •5•7•0•0•Updated Feb 12, 2024Feb 12, 2024

    • mppca_denoise

      Public
      MATLAB
      •13•29•2•0•Updated Sep 11, 2023Sep 11, 2023

    • RaW-seg

      Public
      Random walker (RaW) segmentation of myelinated axons in 3D EM data
      MATLAB
      •
      Other
      •0•2•0•0•Updated Aug 11, 2021Aug 11, 2021

    • rpg-degibbs

      Public
      Removal of Partial-Fourier induced Gibbs-ringing (RPG) in Lee et al., Magn Reson Med 2021
      C++
      •
      Other
      •2•8•1•0•Updated Jul 7, 2021Jul 7, 2021

    • monte-carlo-simulation-1D-membrane

      Public
      Monte Carlo simulations in Lee and Papaioannou, et al., NeuroImage 2020
      MATLAB
      •
      Other
      •1•2•0•0•Updated Aug 9, 2020Aug 9, 2020

    • MPPCAfmri

      Public
      analysis scripts
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 25, 2020Jun 25, 2020

    • AxonRadiusMapping

      Public
      MATLAB
      •
      Mozilla Public License 2.0
      •4•0•0•0•Updated Jan 30, 2020Jan 30, 2020

    • RPBM

      Public
      Random Permeable Barrier Model for time-dependent diffusion
      MATLAB
      •2•4•0•0•Updated Nov 14, 2019Nov 14, 2019