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    17 repositories

    • cogent3

      Public
      Comparative Genomics Toolkit 3
      data-sciencebioinformaticsstatisticsgenomicsbiologyevolutionsignal-processingparallelmarkov-chainphylogenetic-trees
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •54•102•54•3•Updated Nov 22, 2024Nov 22, 2024

    • cogent3_and_plotly

      Public
      Using cogent3 and plotly
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • cogent3.github.io

      Public
      Contents for cogent3.org
      Dockerfile
      •5•1•5•0•Updated Oct 31, 2024Oct 31, 2024

    • ensembl_tui

      Public
      A new approach to obtaining local copies of ensembl data
      Python
      •
      Apache License 2.0
      •21•20•13•1•Updated Oct 4, 2024Oct 4, 2024

    • c3dev-docker

      Public
      Docker container for Cogent3 development
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • app_template

      Public
      A template for creating cogent3 apps
      Python
      •1•0•1•0•Updated Jul 23, 2024Jul 23, 2024

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • SMBE2024Workshop

      Public
      Material for SMBE 2024
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•4•0•Updated Jul 15, 2024Jul 15, 2024

    • Cogent3Workshop

      Public
      Materials for the Phylomania workshop
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•8•22•0•Updated Jun 25, 2024Jun 25, 2024

    • iqtree2_serialization

      Public archive
      a python front end for IQ-TREE2 (software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org)
      C++
      •
      GNU General Public License v2.0
      •57•0•0•0•Updated Jun 19, 2024Jun 19, 2024

    • ensembldb3

      Public
      Python
      •21•9•3•0•Updated Nov 29, 2023Nov 29, 2023

    • c3dev

      Public
      cogent3 developer tools
      Dockerfile
      •9•5•14•0•Updated Nov 20, 2023Nov 20, 2023

    • PiQTree2dev

      Public
      Details for building development containers for PiQTree2 projects
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•3•0•Updated Sep 26, 2023Sep 26, 2023

    • iqtree2

      Public
      NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
      C++
      •
      GNU General Public License v2.0
      •57•1•10•0•Updated Sep 12, 2023Sep 12, 2023

    • czi-project

      Public
      alpha project name of integrating graphbin, iqtree an cogent3
      GNU General Public License v3.0
      •0•0•1•0•Updated Jun 14, 2023Jun 14, 2023

    • homologsampler

      Public
      Python
      •2•2•0•0•Updated Dec 13, 2020Dec 13, 2020

    • c3test

      Public
      for testing doc build to GH pages
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated May 19, 2020May 19, 2020