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    11 repositories

    • finches

      Public
      FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interactions for IDRs
      Jupyter Notebook
      •
      Other
      •1•5•1•0•Updated Dec 12, 2024Dec 12, 2024

    • goose

      Public
      A python package for generating disordered sequences and disorder sequence variants.
      Python
      •
      MIT License
      •1•8•0•0•Updated Dec 9, 2024Dec 9, 2024

    • metapredict

      Public
      A machine learning based protein disorder predictor.
      Python
      •
      MIT License
      •5•21•0•0•Updated Nov 14, 2024Nov 14, 2024

    • sparrow

      Public
      Next generation sequence parameter library for proteins
      Python
      •
      MIT License
      •3•26•0•0•Updated Nov 11, 2024Nov 11, 2024

    • dodo

      Public
      DODO is a Python package for taking an AF2 structure and redesigning the IDRs to look more 'IDR like'.
      Python
      •
      MIT License
      •1•6•0•0•Updated Oct 22, 2024Oct 22, 2024

    • parrot

      Public
      Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.
      Python
      •
      MIT License
      •2•18•1•0•Updated Aug 29, 2024Aug 29, 2024

    • idpcolab

      Public
      A centralized location to link various IDP-centric Google colab notebooks
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 22, 2024Jul 22, 2024

    • finches-colab

      Public
      Repository for user-facing colab notebooks that use FINCHES
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 16, 2024Jul 16, 2024

    • flamingo

      Public
      Repo for running and analyzing simulations of IDR motifs bound to folded domains
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 23, 2024Jan 23, 2024

    • afrc

      Public
      Implementation of our reference polymer model for an unfolded protein as an ideal chain
      Python
      •
      GNU Lesser General Public License v3.0
      •0•1•1•0•Updated Mar 6, 2023Mar 6, 2023

    • PIPIT

      Public
      A simple package to design shuffled protein sequences to interupt function.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 12, 2022Jan 12, 2022