BioTM, LASIGE, Fac. Ciências, Universidade de Lisboa

All

57 repositories

MiCRA
Public
Microbial Communities for Regenerative Agriculture
Python
•0•0•0•0•Updated Nov 22, 2024Nov 22, 2024
knowledge-extraction-from-CORD-19
Public
Knowledge extraction from CORD-19 (COVID-19 Open Research Dataset)
Python
•2•2•0•1•Updated Oct 24, 2024Oct 24, 2024
CheRM
Public
Chemical Compounds Recommender Matrix
Python
•0•1•0•1•Updated Oct 24, 2024Oct 24, 2024
SemanticSimDBcreator
Public
Semantic Similarity Database Creator
Python
•0•0•0•1•Updated Oct 24, 2024Oct 24, 2024
ChemRecSys
Public
Python
•0•1•0•1•Updated Oct 24, 2024Oct 24, 2024
MER
Public
Minimal Named-Entity Recognizer (MER)
Shell
•8•56•3•0•Updated Oct 10, 2024Oct 10, 2024
BENT
Public
Biomedical Term Annotator
natural-language-processing text-mining information-extraction named-entity-recognition biomedical annotation-tool entity-linking entity-extraction named-entity-disambiguation
Python
•
Apache License 2.0
•1•9•0•0•Updated Sep 6, 2024Sep 6, 2024
NILINKER
Public
Attention-based approach to NIL Entity Linking
natural-language-processing information-extraction entity-linking biomedical-text-mining
Python
•0•3•1•0•Updated Sep 4, 2024Sep 4, 2024
X-Linker
Public
Python
•1•1•0•0•Updated Aug 1, 2024Aug 1, 2024
DiShIn
Public
Semantic Similarity Measures using Disjunctive Shared Information
Python
•
Apache License 2.0
•4•24•1•0•Updated Jul 2, 2024Jul 2, 2024
merpy
Public
MER python interface
Python
•
Apache License 2.0
•5•12•2•1•Updated Jul 2, 2024Jul 2, 2024
REEL
Public
REEL: Relation Extraction for Entity Linking
Python
•
Apache License 2.0
•3•10•0•2•Updated May 3, 2024May 3, 2024
MultiNEL-corpus
Public
A multilingual silver standard corpus containing English, Portuguese and Spanish clinical case reports annotated with medical diagnostic codes
Python
•1•3•0•1•Updated May 3, 2024May 3, 2024
K-RET
Public
K-RET: Knowledgeable Biomedical Relation Extraction System
text-mining deep-learning nlp-machine-learning bert relation-extraction biomedical-text-mining bert-fine-tuning
Python
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Apache License 2.0
•3•9•0•0•Updated Jan 11, 2024Jan 11, 2024
BiOnt
Public
BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
text-mining deep-learning ontologies relation-extraction biomedical-text-mining
Python
•
Apache License 2.0
•6•26•1•0•Updated Nov 30, 2023Nov 30, 2023
K-BiOnt
Public
Biomedical Relation Extraction with Knowledge Graph-based Recommendations
text-mining knowledge-graph ontologies nlp-machine-learning relation-extraction biomedical-text-mining bilstm
Python
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Apache License 2.0
•4•8•0•0•Updated Nov 30, 2023Nov 30, 2023
biocreativeVII
Public
lasigeBioTM at BioCreative VII Track 1: Text mining drug and chemical-protein interactions using biomedical ontologies
Python
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Apache License 2.0
•0•1•0•0•Updated Nov 30, 2023Nov 30, 2023
biocreativeVIII_Track1
Public
Apache License 2.0
•0•1•0•0•Updated Nov 23, 2023Nov 23, 2023
K-RET-NEG
Public
Python
•0•0•0•0•Updated Sep 14, 2023Sep 14, 2023
SemEval2023_Task-7
Public
Python
•
Apache License 2.0
•0•1•0•0•Updated Aug 21, 2023Aug 21, 2023
BLiR
Public
Biomarker Literature Retrieval
TeX
•2•5•0•2•Updated May 22, 2023May 22, 2023
BOE
Public
BOE: BiOnt Enhanced for Relation Extraction in Gene and Chemical Compounds interactions (DrugProt corpus)
Python
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MIT License
•0•4•0•0•Updated Mar 23, 2023Mar 23, 2023
exposome_NER_NEL
Public
Python
•0•0•0•0•Updated Feb 24, 2023Feb 24, 2023
BOLSTM
Public
Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies
Python
•
Apache License 2.0
•2•15•3•5•Updated Feb 15, 2023Feb 15, 2023
ICRel
Public
Identifying Cellular Relations
Python
•
MIT License
•1•6•0•5•Updated Dec 8, 2022Dec 8, 2022
PGR
Public
A Silver Standard Corpus of Human Phenotype-Gene Relations
genes datasets phenotypes relation-extraction biomedical-text-mining
Python
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Apache License 2.0
•3•12•0•0•Updated Oct 6, 2022Oct 6, 2022
NPDR
Public
Negative Phenotype-Disease Relations dataset
Python
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Apache License 2.0
•0•0•0•0•Updated Sep 27, 2022Sep 27, 2022
RecSys.Scifi.tutorial
Public
Jupyter Notebook
•1•3•0•0•Updated Sep 20, 2022Sep 20, 2022
SeEn
Public
Sequential Enrichment
Python
•0•0•0•0•Updated Jan 23, 2022Jan 23, 2022
cARM
Public
create Astro Ratings Matrix
Python
•0•0•0•0•Updated Jan 21, 2022Jan 21, 2022