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  • Instituto Butantan
  • Sao Paulo, Brazil

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pedronachtigall/README.md

Pedro G. Nachtigall, Ph.D.

Bioinformatics || Evolution || Genetics

About me

I like to design novel tools and integrate available approaches to convert data into biological knowledge. I consider myself a computational biologist with high enthusiasm of using and integrating novel technologies to study evolution, ecology, and genetics. Currently, I am using high-throughput sequencing methodologies to better understand venom evolution in snakes.

I have 10+ years of experience in bioinformatics, statistics, programming, software engineering, pipeline development, and high-throughput sequencing data analysis. I have a wide experience in a variety of 'omic' data (genomics, epigenomics, transcriptomics, and proteomics) generated by short- and/or long-reads methodologies.

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Repositories

Find below a list of the repositories containing tools, scripts, tutorials, and guides that I've been developed so far.

Tools

Bioinformatics tutorials/guides

Contact

📫 [email protected]

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  1. CodAn CodAn Public

    CDS prediction in transcripts

    Python 23 5

  2. MITGARD MITGARD Public

    Mitochondrial Genome Assembly

    Python 14 4

  3. ToxCodAn ToxCodAn Public

    Toxin genes annotation in venom gland transcriptome assembly

    Python 8 4

  4. ToxCodAn-Genome ToxCodAn-Genome Public

    Toxin genes annotation in genome assembly

    Python 6 3

  5. UTRan UTRan Public

    UTR annotation of de novo assembled transcripts

    Python 1

  6. denomiR denomiR Public

    De novo identification of miRNAs

    Python 1