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piranha v1.1.1
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@aineniamh aineniamh released this 24 Oct 16:13
· 317 commits to main since this release
1.1.1
826c743

Release notes

  • Fix for issue #162 which was introduced with update to fasta header format
  • Big alteration to fasta header formatting now for issue #159
    Consensus fasta header format now includes a record id and record description set of fields. ID will always be consistent, and empty if certain fields not provided. Description dynamic, and can have extra info included with --all-metadata-to-header flag
>SAMPLE|REFERENCE_GROUP|CNS_ID|EPID|SAMPLE_DATE barcode=barcode01 variant_count=8 variants=17:CT;161:CT;427:GA;497:AC;507:CT;772:AG;822:CT;870:CA reference=Poliovirus3-Sabin_AY184221

Where the ID is: SAMPLE|REFERENCE_GROUP|CNS_ID|EPID|SAMPLE_DATE
And the description is: barcode=barcode01 variant_count=8 variants=17:CT;161:CT;427:GA;497:AC;507:CT;772:AG;822:CT;870:CA reference=Poliovirus3-Sabin_AY184221

  • For issue #156 can now colour by call as well in the phylogeny
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