v1.45.1

RELEASE NOTES FOR SeqMonk v1.45.1

This is a bugfix release which resolves some issues in the previous
release. It also adds some minor additional functionality.

Changes in this release are:

1. We fixed a bug in the packaging script for OSX which meant that
   SeqMonk was not using the bundled JRE and was reliant on the
   presence of a Java installation on the host machine. This also
   caused a failure to launch on machines running a version of
   Java older than 1.8.

2. We updated our BAM parser from the old samtools java library to
   the newer htslib parser. This should resolve crashes caused when
   the mapping command line recorded in the BAM header contained a
   colon. Using the newer parser should also be somewhat quicker.

3. We fixed some limitations in Vistories. The table of contents
   in the HTML report won't now truncate on smaller screens. We
   capture some additional events which we were missing before.
   Additional fixes will follow in future releases.

4. We fixed a crash in the List Annotation Value filter.

5. We added a new display option to change how replicate sets treat
   probes which have quantitations for some (but not all) of their
   members. Previously we had returned an NA value for the mean of
   the probe if any member contained an NA. You can now choose to
   return the mean of however many members contain valid values to
   give more complete coverage of your data.