Paintera paintera-1.6.0

🚀 Features

• Add ellipses after menus that open dialogs
• Optionally activate replacement label during smoothing, add Smooth permissions
• Change default 3D rotation speeds
• Allow resize views during Shape Interpolation

Improvements

• Check if tools/actions are valid when creating buttons, and disable buttons if not
• More granular ActionType permissions for resizing/toggling UI elements
• Improved action/tool validation

🐛 Bug Fixes

• FIRST_TEMP_ID is temp id
• Handle is SAM service is not available more gracefully
• Dont block on the main thread when setting the id.
• Don't expose temporary ID in status text
• Re-check for sam server availability
• Valid tool switching, and SAM tool validity
• Reset to default on empty SAM Service only when focus lost
• Change intensity threshold bindings to H to not conflict with key rotation around Y axis
• Return fill interval from async, instead of querying property.
• Correctly handle more general resolution for arbitrary orthoslice painting.
• In practice, these edge cases are not hit. Need to think better how to integrate them if we want some other heuristics
• Update ViewerDisplayListener after repaint. Don't create objects unnecessarily
• Remove debug code
• fix toggle sam point types in SI
• Requires ResizeViewers to resize panel also

🚜 Refactor

• How to generate local temp ids
• Improve non-volatile render support
• Use actions for 3d context menu
• Select next id verify
• Interpolation logic during SI

Build

• Readme and version bump

Paintera paintera-1.5.1

🚀 Features

• Change mesh settings defaults
• Change brush size with keys (minus,down and equals,plus,up)

🐛 Bug Fixes

• SamCacheLoader should be robust to child job failures
• Don't constantly request new navigation based embeddings
• Use non-volatile source for SAM render
• Support rendering of non-volatile LMT
• Cancel selectAll from prior attempts
• Reuse clients, accept cookies
• Wrap nonvolatile for volatile sam image
• Better fix for non-volatile data source composite
• Ensure unwrapped/wrapped SourceAndConverter for non-volatile data sources play nicely with the sam cache loader
• Re-enable navigation based sam embedding request

⚡ Performance

• Remove scale levels that are too small
• Shape interpolation improvements

Build

• Bump app.version

Paintera paintera-1.5.0

🚀 Features

• Shift click in orthogonal views to trigger auto-SAM in shape interpolation
• Specify Virtual Crop Interval in Raw Source / Read-Only Label Source Metadata
• Add export source functionality

🐛 Bug Fixes

• Don't select 0 label with next()
• Switch tool off main thread, wait for it with SAM
• Navigation after saving
• More robust tool switching logic
• Update multiresolution renderer when increasing number of screen scales
• Update on source change
• Navigation tool during SI
• Disabled view auto-sam point based on click location
• Remove invalid preview features
• Small improvements
• Intersect painting, randomTempId
• Setting activeTool triggers listeners. Make sure tool is active before setting to activeTool
• Existing slice masks not being provided during getMask()
• Commit canvas over integer types handles outOfBounds
• Don't hang when trying to Fill3D on non-visible source

🚜 Refactor

• Application config directory to use ProjectDirectories; configurable
• Source Opener dialog and logic
• Small changes to open source dialog
• Wrap setCurrentLabel
• Miscellaneous
• Color empty lists as 0
• Fix mesh refresh logic
• Listen, don't bind, status property for tools
• Don't use STR interpolation preview, it was removed in newer JDK releases
• Some safety checks and misc
• Improve type compatibility with convenience converter extensions
• Clean up export source logic
• Don't automatically close window after export source
• Rename to virtual crop; move logic to metadata config node, out of open source

⚡ Performance

• Don't recursively generate biconverters for shape interpolation mask result
• Memory improvements, especially related to LMT

⚙️ Miscellaneous Tasks

• Remove unused files
• Remove old serialization logic
• Remove dead code
• Clean unused code
• Serialize units, misc
• Cleanup some incorrect pom and code commits

Build

• Bump label multiset
• Windows packaging can't have -SNAPSHOT in version

Paintera paintera-1.4.3

[maven-release-plugin] prepare release paintera-1.4.3

Paintera paintera-1.4.2

🐛 Bug Fixes

• Navigation in shape interpolation working correctly
• Don't double-activate tools unnecessarily

Paintera paintera-1.4.1

[paintera-1.4.1] - 2024-08-13

🚀 Features

• Add some N5 convenience extension methods for get/set attributes
• [breaking] Support read-only ID services

🐛 Bug Fixes

• Serialize label block lookup to paintera data metadata properly
• Remove all tool listeners when deactivating
• Replace the mask if floodfill cancelled on first slice of shape interpolation
• Respect useVolatileIfAvailable parameter
• Fill tool should be cancellable
• Set valid datasets directly, not on JavaFx thread
• Some race conditions triggered by activating/deactivate modes/tools out of order
• Trigger rendering when returning from maximized viewer
• Points managed on javafx thread
• useSystemProperties() for HttpClientBuilder, and join servicesUrl with /

🚜 Refactor

• Simplify display listener logic

⚡ Performance

• Provide ref for lme iteration
• Deactivate run on Default Dispatcher, can be blocked (see Fill2Dtool) or delayed
• Some flood fill optimizations
• Don't parallelize within the block when downsampling. Parallelization should happen across blocks
• Support empty blocks when downsampling label multiset data
• Short-circuit null if access is empty

🧪 Testing

• Convert to kotlin

⚙️ Miscellaneous Tasks

• Add convenience method
• Style,misc
• Dep version bumps
• Version bumps

Build

• Bump deps

Paintera paintera-1.3.4

🐛 Bug Fixes

• Use LocalIdService when writer isn't available
• Some regressions from the perf commit
• NPE when canceling without a button pressed in commit dialog
• Some graphical issues with incorrect interpolation rendering, an incorrect triggering of adding/removing slices with flood fill (tool or click)
• Selection objects at interpolant in SI mode
• Unlocked slices should start in temporary prompt mode
• Default to N5 as often as possible; require for new label multiset type labels

🚜 Refactor

• Remove reactivex dependency
• Temporary projects should be N5
• Prefer coroutines to Tasks
• Tasks -> coroutines
• (BREAKING) Migrate to new saalfx coroutine backend
• Default to N5 logic encapsulated in N5FactoryWithCache

⚡ Performance

• Better handling of invalid user input, vs exceptions when creating dataset
• Improve floodfill 2D performance

⚙️ Miscellaneous Tasks

• Unused code, reorder imports

Build

• Bump dep versions, pom-scijava
• Remove saalfx snapshot dep
• Bump app.version

Paintera paintera-1.3.3

[paintera-1.3.3] - 2024-06-24

🚀 Features

• Add source specfic keys for raw source

🐛 Bug Fixes

• Restart SAM_TASK_SCOPE if an exception is thrown
• Issue where an old embedding and transform would be shown to the user
• Flood fill in shape interpolation should be cancellable

⚙️ Miscellaneous Tasks

• Bump saalfx

Paintera paintera-1.3.2

[paintera-1.3.2] - 2024-06-20

🐛 Bug Fixes

• Issues with orthoslice meshes on Apple Silicon Mac Sonoma

Build

• Version bumps for N5 bug fixes

Paintera paintera-1.3.1

[paintera-1.3.1] - 2024-06-13

🚀 Features

• Toggle whether background ID color is visible or not. NOT visible by default
• Start with first ID when creating a new label source.
• Toggle in color converter for background ID visibility

🐛 Bug Fixes

• Scalar label datasets should be uint64
• Fail early if out of bounds
• Improve cleanup of resources from ViewerMask

⚡ Performance

• Don't create meshes for temporary IDs
• Invalidate embeddings when leaving SI mode
• Use IO Dispatcher instead of UtilityTask