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306 Open 1,673 Closed
306 Open 1,673 Closed
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Issues list

bcftools csq Error: the fasta reference does not match the VCF REF allele at h2tg000007l:1000944
#2323 opened Nov 24, 2024 by leon945945
Problem with specifying filtering expression v1.21
#2322 opened Nov 20, 2024 by reshu23
Majority of SNPs have allele frequency = 0.000000
#2321 opened Nov 19, 2024 by ryanskiba
bcftools view -m 2 -M 2 referencePanel.vcf.gz（SV and SNP）
#2320 opened Nov 18, 2024 by SunWinner01
2
Filter a gene list including intergenic regions
#2319 opened Nov 12, 2024 by ccbruels
2
bcftools consensous fails to write to GCP
#2316 opened Nov 11, 2024 by Ieremie
Consensus of ALTs only without genotypes in file enhancement
#2315 opened Nov 9, 2024 by schorlton-bugseq
2
Error: bcftools csq --- splice_build_hap: Assertion `splice->tr->beg <= rbeg' failed.
#2313 opened Nov 7, 2024 by sbgonenc
seg fault for reheader -o
#2311 opened Oct 30, 2024 by Ahuiting
3
How to Generate Haplotype 1 and 2 FASTA Files Using Phased VCF from HiPhase
#2310 opened Oct 24, 2024 by ClarenceHsiang
1
Bcftools view——locate problematic genotype in GT field
#2309 opened Oct 24, 2024 by Lloyd-LiuSiyi
6
bcftools annotate - tag ID not defined
#2302 opened Oct 15, 2024 by ValentinaPeona
3
Issue with bcftools annotate
#2297 opened Sep 30, 2024 by HVHunt
1
bcftools csq: Change chromosome name requirement.
#2294 opened Sep 28, 2024 by niederhuth
1
Error "Failed to read from standard input: unknown file type" with Gzipped BAM Files
#2293 opened Sep 27, 2024 by Silvia-lme
1
How to populate Fisher test annotation
#2287 opened Sep 26, 2024 by pd3
1
Document / Improve / Polish / Fix --indels-2.0 bug D1: Difficult enhancement P2: Desirable
#2280 opened Sep 17, 2024 by jkbonfield
3
Significant difference between IDV and AD when calling certain RNA-seq indels with mpileup
#2277 opened Sep 12, 2024 by luyh-xp
2
8
Variable expansion issue with +setGT? [$VARIABLE-] isn't working...
#2276 opened Sep 9, 2024 by goeckeritz
1
annotate add INFO/tag form CHROM-POS-REF-ALT
#2273 opened Sep 6, 2024 by user-tq
annotate ID for multi-allelic sites
#2264 opened Aug 20, 2024 by ikarus97
1
Remove the * ALT Allele Reporting From a g.vcf Before (or After) Genotyping
#2258 opened Aug 14, 2024 by jon4thin
1
bcftools mpileup resulting in downstream unparsable vcf record with allele M needs-feedback
#2256 opened Aug 13, 2024 by anscholes
1
bcftools concat retry mechanisms? htslib-dependent Cannot be fixed until htslib is fixed
#2245 opened Aug 6, 2024 by graphenn
2
Bcftools mpileup needs-feedback
#2237 opened Jul 26, 2024 by Mashindersingh
1
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