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Issues list

[BUG] No workflows generated for trivial input/output bug Something isn't working
#119 opened Oct 19, 2024 by 524D
@vedran-kasalica
The generated CWLs should use biotoolsID enhancement New feature or request
#118 opened Sep 25, 2024 by vedran-kasalica
@vedran-kasalica
[FEATURE] Update constraint templates not to require parameters always enhancement New feature or request
#116 opened Aug 15, 2024 by vedran-kasalica
@vedran-kasalica
Error "format_2196" and "data_0916" not belonging to "format_1915" and "data_0006" respectively documentation Improvements or additions to documentation faq Frequently asked questions
#115 opened Jun 4, 2024 by almanilsson
1 of 2 tasks
@vedran-kasalica
1
[BUG] Workflow names skip 8, 9, 18, 19... bug Something isn't working
#112 opened May 16, 2024 by vedran-kasalica
@vedran-kasalica
1
CWL reference implementations should reference the main branch
#107 opened Feb 7, 2024 by vedran-kasalica
@vedran-kasalica
Change the naming of the tools in CWL Comet_01 -> 1_Comet
#106 opened Jan 31, 2024 by vedran-kasalica
@vedran-kasalica
Dependabot should check and update the POM references enhancement New feature or request
#83 opened Nov 1, 2023 by vedran-kasalica
Fix CI - do not rely on the Workflomics pipeline bug Something isn't working dependencies Pull requests that update a dependency file
#79 opened Oct 16, 2023 by vedran-kasalica
@vedran-kasalica
Check SLTLx formulas earlier enhancement New feature or request
#66 opened Jul 6, 2022 by KoenHav
APE v2 Should be added to ape-framework.readthedocs.io
#60 opened Jun 1, 2022 by vedran-kasalica
4 tasks
@KoenHav @vedran-kasalica
1
Potential secutiry vulnerabilities in the shared library which APE depends on. Can you help upgrade to patch versions?
#55 opened Apr 24, 2022 by HelenParr
1
Update shell script outputs to match the CWL output format good first issue Good for newcomers
#50 opened Dec 2, 2021 by vedran-kasalica
Add I/O types as relevant types
#5 opened Feb 19, 2020 by vedran-kasalica
@vedran-kasalica
Bug in parallel execution bug Something isn't working
#4 opened Feb 7, 2020 by vedran-kasalica
@vedran-kasalica
1
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