Add new profiles to hadge

[wxicu]

1. add profiles conda, docker, arm, test, like in nf-core
2. Change some values of parameter from FALSE to False, reduce mixed-case problem
3. Specify conda configuration in conda directive. Customized conda configuration is recommended to specify in a new profile now
4. docs is adapted

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[wxicu]

@Zethson ready for review

[Zethson]

This is really really awesome. What happens now if I specify Docker or Conda and attempt to run Souporcell? We're not gracefully handling the issue, are we?

Now we should be able to bring it all together:

Please add a Github Actions workflow that runs the test profile using https://github.com/marketplace/actions/setup-nextflow
If everything is well designed and works with Conda/Docker (except for souporcell) this should hopefully be a piece of cake.

This will be a nice major milestone.

Thank you very much!

[Zethson]

Ideally all of these should eventually be fetched directly from the cloud but let's not bother with that for now. Downloading them with the script is OK.

[wxicu]

This is really really awesome. What happens now if I specify Docker or Conda and attempt to run Souporcell? We're not gracefully handling the issue, are we?

Now we should be able to bring it all together:

Please add a Github Actions workflow that runs the test profile using https://github.com/marketplace/actions/setup-nextflow If everything is well designed and works with Conda/Docker (except for souporcell) this should hopefully be a piece of cake.

This will be a nice major milestone.

Thank you very much!

Is it possible to upload the test data to cloud which can be used by github workflow action directly? Reference genome is tooooo large...

[Zethson]

Ohhh I see. nf-core has small test reference genomes. See: https://github.com/nf-core/rnaseq/blob/master/conf/test.config#L27