Code

Add new profiles to hadge#24

Code

Merged

Zethson merged 32 commits intomaintheislab/hadge:mainfrom docstheislab/hadge:docsCopy head branch name to clipboardNov 17, 2023

+2,605-1,780

Commits

Commits on Nov 3, 2023

• update docs

  wxicu

  committed
  ea82311

Commits on Nov 4, 2023

• improve conda directive, add profiles

  wxicu

  committed
  3534e20

• fix warning

  wxicu

  committed
  e6c1c01

• add test profile to souporcell

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  committed
  6139bd5

• upload test config

  wxicu

  committed
  d8fb67d

Commits on Nov 5, 2023

• 1.add line break 2.remove container setting 3. adapt souporcell testing

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  committed
  2d5767b

• add notebook

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  committed
  0b2fd70

• add souporcell res in notebook

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  committed
  6c41264

Commits on Nov 6, 2023

• enable conda and singularity for test config

  wxicu

  committed
  49e8cb6

• Merge branch 'main' into docs

  wxicu

  authored
  cdcda52

• fix pre commit

  wxicu

  committed
  b5f02b2

• minor changes

  wxicu

  committed
  99589b6

• add quick starts for three mode

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  committed
  aa01844

Commits on Nov 7, 2023

• upgrade pandas and python version, simplify summary code, add github workflow action

  wxicu

  committed
  f995c5f

• remove empty lines

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  committed
  4dcb1ed

• add test action

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  committed
  33f1bb9

• fix typo

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  committed
  b5b7946

• change on action

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  committed
  22b5f63

• update singularity version

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  committed
  2ca87c4

• fix bug

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  committed
  629fd96

Commits on Nov 9, 2023

• use subset reference genome as test data

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  committed
  17d4b20

• remove folder

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  committed
  e5c5ae9

• fix test data loc bug

  wxicu

  committed
  6646ab3

• solve conda env issue

  wxicu

  committed
  9f809e6

• add setup conda section to update conda

  wxicu

  committed
  59f9ad9

• update conda setup

  wxicu

  committed
  d577aad

• solve conda env issue

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  committed
  3749bf0

Commits on Nov 12, 2023

• disable souporcell

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  committed
  c46c199

• enable new hashing tools

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  committed
  4155572

• disable new hashing methods + add mudata

  wxicu

  committed
  688770b

• disable anndata in test workflow to reduce memory

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  committed
  2e63ce1

Commits on Nov 16, 2023

• disable mudata for memory

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  committed
  66319ab