Source code of the Bgee pipeline used to build the Bgee database

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

A collection of miscellaneous bioinformatics scripts

backup for https://www.bioconductor.org/packages/3.12/bioc/html/simpleaffy.html

Affymetrix OncoScan / OncoScan_CNV processing using apt-copynumber-onco-ssa (2.4.0)

Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk

App to illustrate the history of transcript cluster annotations of the Affy array HTA2.0

Affymetrix CytoScan (750k / HD) processing using apt-copynumber-cyto-ssa (2.4.0)

Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies

Gene expression experiments using Python and R

🔬 Affymetrix Fusion Software Developers Kit (SDK)

R scripts & functions for SNP data analysis of genotyping data from Affymetrix Axiom arrays

Smarter database repository

Microarray Analysis of Differential Expression

Find shared SNPs between different microarray chips

Differential Expression Analysis Pipeline

Creates a GCT file from a set of CEL files from Affymetrix ST arrays.

Affymetrix GenomeWideSNP_6 processing using apt-copynumber-workflow (1.20.0)

Updated version to handle CEL files

The fruits of my labor to get OpenBLAS to work with R and fix the p_thread22() error in affy::rma()