Toolkit for processing sequences in FASTA/Q formats

A comprehensive library for computational molecular biology

BWK awk modified for biological data

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Fast alignment and preprocessing of chromatin profiles

Fast multi-line FASTA/Q reader in several programming languages

Cython bindings and Python interface to HMMER3.

A Python package for CD-HIT, clustering protein or nucleotide sequences.

A fast multiple sequence alignment program.

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

Open source bioinformatics and computational biology toolbox written in F#.

iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

Physicochemical properties, indices and descriptors for amino-acid sequences.

Gfapy: a flexible and extensible software library for handling sequence graphs in Python

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

Tools and software library developed by the ONT Applications group

Sequence alignment tools