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201 Open 385 Closed
201 Open 385 Closed
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Issues list

freebayes option "--region" in present in vcf file but not in log file freebayes command
#603 opened Nov 26, 2024 by sachiwije
Snippy tool successfully run but no variants identified which expected to be found
#602 opened Nov 19, 2024 by imran-24-du
Error Installing with linuxbrew
#600 opened Nov 5, 2024 by joaomatos02
Raw VCF
#599 opened Nov 4, 2024 by sydelstan
samtools markdup: error, no ms score tag
#598 opened Sep 18, 2024 by lusacristan
5
No variants found
#597 opened Aug 27, 2024 by BlackMonolith
2
Snippy not identifying rRNA SNPs (presumably due to conserved region?)
#595 opened Aug 11, 2024 by BGemler
homebrew snippy installation finding incorrect perl binaries
#594 opened Aug 9, 2024 by paulsenlab
Need bcftools --version >= 1.7 but you have 0 - please upgrade it
#592 opened Jul 14, 2024 by NoamanJane
1
snippy-multi ERROR: Can't open --ref BZ100/ref.fa
#591 opened Jul 3, 2024 by makerer5
8
why snippy generated variations less than snp-sites generated from core gene alignment?
#590 opened Jun 9, 2024 by Zjianglin
Request to troubleshoot bcftools error encountered while installing snippy in macOS Sonoma 14.4.1
#589 opened May 16, 2024 by Jeewan-Thapa
1
Snippy can't read my assembly.fasta files
#588 opened May 8, 2024 by dianaespadinha
Unable to calculate estimated library size: samtools markdup
#587 opened Apr 16, 2024 by Shyamili09
bcftool error
#586 opened Mar 28, 2024 by SaraRHenderson
1
freebayes-parallel Error
#585 opened Mar 8, 2024 by xxxxxxsf
1
vcfstreamsort: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory vcfuniq: error while loading shared libraries: libtabixpp.so.0: cannot open shared object file: No such file or directory
#584 opened Mar 1, 2024 by shangguan77
3
™ BrokenPipeError: [Errno 32] Broken pipe, can you please assist for this error
#582 opened Feb 7, 2024 by EtienneNtumba
1
Snippy fails with genbank file
#581 opened Jan 29, 2024 by mesti90
4
Snippy: no output - identification of 0 variants and empty csv file
#580 opened Jan 25, 2024 by ZoseJapata
4
How to use snippy with pre-indexed reference
#579 opened Jan 14, 2024 by minhdz09
Which alignment file can be used to create SNP matrix for clonal studies
#578 opened Dec 14, 2023 by Firdoos071
Error running snippy
#577 opened Dec 14, 2023 by AlbaMunozSanta
Files to test an installation
#576 opened Dec 4, 2023 by jolespin
samtools excluded most reads
#574 opened Nov 20, 2023 by DorothyTamYiLing
1
ProTip! What’s not been updated in a month: updated:<2024-10-28.