Skip to content
@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

Pinned Loading

  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 70 33

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 128 28

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 7

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 31 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 7 6

Repositories

Showing 10 of 106 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 1 3 5 0 Updated Dec 18, 2024
  • BugSigDB Public

    A microbial signatures database

    waldronlab/BugSigDB’s past year of commit activity
    JavaScript 7 6 15 1 Updated Dec 18, 2024
  • OmicsMLRepoData Public

    Translate Bioconductor resources into AI/ML-ready format + Manual curation/harmonization of the metadata for improved usability

    waldronlab/OmicsMLRepoData’s past year of commit activity
    R 2 0 4 (2 issues need help) 0 Updated Dec 17, 2024
  • BugSigDBEnrich Public

    A ShinyApp to perform enrichemnt analysis with BugSigDB signatures.

    waldronlab/BugSigDBEnrich’s past year of commit activity
    HTML 0 0 5 0 Updated Dec 17, 2024
  • TCGAutils Public

    Toolbox package for organizing and working with TCGA data

    waldronlab/TCGAutils’s past year of commit activity
    R 23 6 1 0 Updated Dec 16, 2024
  • lefser Public

    R implementation of the LEfSe method

    waldronlab/lefser’s past year of commit activity
    R 51 5 9 1 Updated Dec 16, 2024
  • MicrobiomeBenchmarkDataAnalyses Public

    Analyses using the datasets provided by the MicrobiomeBenchmarkData package.

    waldronlab/MicrobiomeBenchmarkDataAnalyses’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 12, 2024
  • cmdMeta Public

    Dashboard for cMD

    waldronlab/cmdMeta’s past year of commit activity
    R 0 0 0 0 Updated Dec 11, 2024
  • cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    waldronlab/cBioPortalData’s past year of commit activity
    R 31 13 4 0 Updated Dec 10, 2024
  • XeniumIO Public

    software for importing 10X Xenium data

    waldronlab/XeniumIO’s past year of commit activity
    R 0 0 0 0 Updated Dec 6, 2024

Most used topics

Loading…