Bump version, update maps, suppress warning in splitstachshape::cSpli…

…t, update HGNC URL in documentation

DESCRIPTION

@@ -5,8 +5,8 @@ Authors@R: c(person("Sehyun", "Oh", email = "[email protected]", role = c("
   person("Ayush", "Aggarwal", email = "[email protected]", role = c("aut")),
   person("Markus", "Riester", email = "[email protected]", role = c("aut")),
   person("Levi", "Waldron", email = "[email protected]", role = c("aut", "cre")))
-Version: 0.8.14
-Date: 2024-05-17
+Version: 0.8.15
+Date: 2024-11-16
 License: GPL (>=2.0)
 Title: Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols
 Description: Contains functions for
@@ -17,7 +17,7 @@ Description: Contains functions for
 URL: https://github.com/waldronlab/HGNChelper, https://waldronlab.io/HGNChelper/
 BugReports: https://github.com/waldronlab/HGNChelper/issues
 LazyData: TRUE
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Encoding: UTF-8
 Imports: splitstackshape
 Suggests: testthat,

R/data.R

@@ -32,7 +32,7 @@
 #' data("hgnc.table", package="HGNChelper")
 #' head(hgnc.table)
 #' 
-#' @source Extracted from \url{ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/hgnc_complete_set.txt}
+#' @source Extracted from \url{https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt}
 #' and system.file("extdata/mog_map.csv", package="HGNChelper")
 "hgnc.table"
 

R/getCurrentMaps.R

@@ -99,7 +99,7 @@ getCurrentHumanMap <- function(){
   output <- .fixttable(output)
   output <- merge(output, map[, c("location", "symbol")], by = 2)
   output <- output[, c(2, 1, 3)]
-  output <- splitstackshape::cSplit(splitstackshape::cSplit(output, 3, "p"), 3, "q")
+  output <- suppressWarnings(splitstackshape::cSplit(splitstackshape::cSplit(output, 3, "p"), 3, "q"))
   output <- output[, c(1, 2, 5)]
   colnames(output)[3] <- "chromosome"
   return(output)

inst/extdata/date_of_last_update.txt

@@ -1 +1 @@
-Fri May 17 15:09:37 2024
+Sat Nov 16 10:35:32 2024