Update default import to Zenodo release v1.2.2 (#62)

* Lower nrows requirement in test * Update default import to release v1.2.2 * Bump version, update NEWS
waldronlab · Oct 27, 2024 · df8436c · df8436c
1 parent b973847
commit df8436c
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Showing 5 changed files with 17 additions and 5 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: bugsigdbr
-Version: 1.11.3
+Version: 1.11.4
 Title: R-side access to published microbial signatures from BugSigDB
 Authors@R: c(
     person(given = "Ludwig",
@@ -38,4 +38,4 @@ License: GPL-3
 VignetteBuilder: knitr
 biocViews: DataImport, GeneSetEnrichment, Metagenomics, Microbiome
 Encoding: UTF-8
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
diff --git a/NEWS.md b/NEWS.md
@@ -1,5 +1,9 @@
 # bugsigdbr 
 
+## Changes in version 1.11.4
+
+* Update stable release version for data on Zenodo
+
 ## Changes in version 1.8.2
 
 * Uniform first-letter capitalization for Body site and Condition terms

diff --git a/R/bugsigdb.R b/R/bugsigdb.R
@@ -42,6 +42,10 @@
 #' Latest version (incl. not reviewed content): 
 #'      \url{https://github.com/waldronlab/BugSigDBExports}
 #'
+#' Release v1.2.2: \url{https://zenodo.org/records/13997429}
+#'
+#' Release v1.2.1: \url{https://zenodo.org/records/10627578}
+#'
 #' Release v1.2.0: \url{https://zenodo.org/records/10407666}
 #'
 #' Release v1.1.0: \url{https://zenodo.org/records/6468009}
@@ -59,7 +63,7 @@
 #'  df <- importBugSigDB()
 #'
 #' @export
-importBugSigDB <- function(version = "10.5281/zenodo.10627578", cache = TRUE)
+importBugSigDB <- function(version = "10.5281/zenodo.13997429", cache = TRUE)
 {
     version <- tolower(version)
 

diff --git a/man/importBugSigDB.Rd b/man/importBugSigDB.Rd
diff --git a/tests/testthat/test-importBugSigDB.R b/tests/testthat/test-importBugSigDB.R
@@ -26,7 +26,7 @@ test_that("importBugSigDB from Zenodo", {
 test_that("importBugSigDB from the edge (devel)", {
     bsdb <- bugsigdbr::importBugSigDB(version = "devel", cache = FALSE)
     url <- "https://tinyurl.com/3nvzm3fx"
-    checkImport(bsdb, url, nrows = 5500)
+    checkImport(bsdb, url, nrows = 5450)
 })
 
 test_that("importBugSigDB from github hash", {