update vignette and remove no longer needed workflow

waldronlab · Sep 14, 2023 · 486a89a · 486a89a
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diff --git a/vignettes/articles/phytools.Rmd b/vignettes/articles/phytools.Rmd
@@ -180,7 +180,7 @@ m3 <- m3[tree$tip.label,]
 
 
 ```{r}
-pruned_tree <- ape::keep.tip(phy = tree, tip = rownames(m1))
+# pruned_tree <- ape::keep.tip(phy = tree, tip = rownames(m1))
 ```
 
 

diff --git a/vignettes/articles/propagation_workflow.Rmd b/vignettes/articles/propagation_workflow.Rmd
-Original file line number
+Diff line change
@@ Expand Up / @@ -180,7 +180,7 @@ m3 <- m3[tree$tip.label,] @@
     ```{r}
-    pruned_tree <- ape::keep.tip(phy = tree, tip = rownames(m1))
+    # pruned_tree <- ape::keep.tip(phy = tree, tip = rownames(m1))
     ```
@@ Expand Down @@