Fix store creation with latest zarr-python v3 #634
Workflow file for this run
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| name: Tests | |
| on: [push, pull_request] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.11", "3.12", "3.13"] | |
| # macos-13 is an intel runner, macos-14 is a arm64 runner | |
| platform: [ubuntu-latest, windows-latest, macos-13, macos-14] | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up Conda | |
| uses: conda-incubator/[email protected] | |
| with: | |
| channels: conda-forge | |
| miniforge-version: latest | |
| python-version: ${{ matrix.python-version }} | |
| - name: Show info about `base` environment | |
| shell: "bash -l {0}" | |
| run: | | |
| conda info | |
| conda config --show-sources | |
| conda list --show-channel-urls | |
| - name: Set up `env` | |
| shell: "bash -l {0}" | |
| run: > | |
| conda create -n env | |
| c-compiler cxx-compiler | |
| python=${{matrix.python-version}} wheel pip | |
| - name: Install clang | |
| shell: "bash -l {0}" | |
| if: matrix.platform == 'macos-13' | |
| run: | | |
| conda activate env | |
| conda install -y 'clang>=12.0.1,<17' | |
| - name: Show info about `env` environment | |
| shell: "bash -l {0}" | |
| run: | | |
| conda list --show-channel-urls -n env | |
| - name: Install numcodecs | |
| shell: "bash -l {0}" | |
| run: | | |
| conda activate env | |
| export DISABLE_NUMCODECS_AVX2="" | |
| # TODO: put back zfpy import when it supports numpy 2.0 | |
| python -m pip install -v -e .[test,test_extras,msgpack,crc32c] | |
| - name: Install pcodec | |
| if: matrix.python-version != '3.13' | |
| shell: "bash -l {0}" | |
| run: | | |
| conda activate env | |
| python -m pip install -v ".[pcodec]" | |
| - name: Install zarr-python | |
| shell: "bash -l {0}" | |
| # Since zarr v3 requires numpy >= 1.25, on Python 3.11 leave it out | |
| # so we can have some tests of our minimum version of numpy (1.24) | |
| if: matrix.python-version != '3.11' | |
| run: | | |
| conda activate env | |
| # TODO: remove --pre option when zarr v3 is out | |
| python -m pip install --pre zarr>=3.0.0b2 | |
| # This is used to test with zfpy, which does not yet support numpy 2.0 | |
| - name: Install older numpy and zfpy | |
| if: matrix.python-version == '3.11' | |
| shell: "bash -l {0}" | |
| run: | | |
| conda activate env | |
| python -m pip install -v ".[zfpy]" | |
| - name: List installed packages | |
| shell: "bash -l {0}" | |
| run: | | |
| conda activate env | |
| python -m pip list | |
| - name: Run tests | |
| shell: "bash -l {0}" | |
| run: | | |
| conda activate env | |
| pytest -v | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| verbose: true |