add more unstable files

nf-core · Nov 8, 2024 · c733ba0 · c733ba0
1 parent 9f65e57
commit c733ba0
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Showing 3 changed files with 11 additions and 5 deletions.
diff --git a/tests/.nftignore b/tests/.nftignore
@@ -11,3 +11,7 @@ report/*.html
 report/*.zip
 *html
 shinyngs_app/**/data.rds
+report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.html
+report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.tsv
+report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.html
+report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.tsv
diff --git a/tests/test_affy.nf.test b/tests/test_affy.nf.test
@@ -16,7 +16,12 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'report/gsea/phenotype_uninvolved_lesional/**/*.png'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}',
+                    'report/gsea/phenotype_uninvolved_lesional/**/*.png',
+                    'report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.html',
+                    'report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.tsv',
+                    'report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.html',
+                    'report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_P53_PATHWAY.tsv'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             assertAll(

diff --git a/tests/test_affy.nf.test.snap b/tests/test_affy.nf.test.snap
@@ -61,8 +61,6 @@
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_FATTY_ACID_METABOLISM.tsv",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_G2M_CHECKPOINT.html",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_G2M_CHECKPOINT.tsv",
-                "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.html",
-                "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.tsv",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL2_STAT5_SIGNALING.html",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL2_STAT5_SIGNALING.tsv",
                 "report/gsea/phenotype_uninvolved_lesional/h.all.v2022.1.Hs.symbols/phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL6_JAK_STAT3_SIGNALING.html",
@@ -167,7 +165,6 @@
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_ESTROGEN_RESPONSE_EARLY.tsv:md5,695b5bd61210e9fd4e76993cee00c63d",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_FATTY_ACID_METABOLISM.tsv:md5,cb069d05610994d1e43ea84de165bcd0",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_G2M_CHECKPOINT.tsv:md5,09eba22af78006f69a9d0cb1bee27331",
-                "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_GLYCOLYSIS.tsv:md5,08c50f431cee394c0280f41345a07d96",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL2_STAT5_SIGNALING.tsv:md5,38824ee08434a02049cf7f57c43545d5",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_IL6_JAK_STAT3_SIGNALING.tsv:md5,ab80e349a52b1b17d350d488d552f2b6",
                 "phenotype_uninvolved_lesional.h.all.v2022.1.Hs.symbols.HALLMARK_INFLAMMATORY_RESPONSE.tsv:md5,99983d81cd0ee6bc9c5e078ea311147c",
@@ -213,6 +210,6 @@
             "nf-test": "0.9.0",
             "nextflow": "24.10.0"
         },
-        "timestamp": "2024-11-08T14:04:25.71001709"
+        "timestamp": "2024-11-08T15:05:24.153458864"
     }
 }