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35 Open 33 Closed
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Issues list

Update BUSCO
#100 opened Dec 2, 2024 by FernandoDuarteF
@FernandoDuarteF
BUSCO_IDEOGRAM for GENOME mode enhancement New feature or request
#98 opened Nov 29, 2024 by FernandoDuarteF
@FernandoDuarteF
BUSCO doesn't keep the original chromosomes IDs on test dataset bug Something isn't working
#97 opened Nov 29, 2024 by FernandoDuarteF
@FernandoDuarteF
1
New feature: Check for overlapping genes in GFF (bedtools intersect) enhancement New feature or request
#93 opened Nov 21, 2024 by chriswyatt1
@chriswyatt1
3
ideograms plot all contigs
#90 opened Nov 14, 2024 by chriswyatt1
2
AGAT_CONVERTSPGXF2GXF on myriad needs more memory bug Something isn't working
#89 opened Nov 14, 2024 by FernandoDuarteF
BUSCO fails due to rate limiter
#85 opened Nov 7, 2024 by chriswyatt1
Make GENOME and GENOME_AND_ANNOTATION into workflows enhancement New feature or request
#81 opened Nov 5, 2024 by FernandoDuarteF
@FernandoDuarteF
3
Run from GTF files (instead of GFF3)
#80 opened Nov 5, 2024 by chriswyatt1
Run from GCA genome only IDs
#79 opened Nov 5, 2024 by chriswyatt1
Check what needs to be in results
#78 opened Nov 4, 2024 by chriswyatt1
Using FASTA_GXF_BUSCO_PLOT sub workflow
#77 opened Oct 31, 2024 by GallVp
1
@GallVp
7
Extract meryl+merqury subworkflow into modules
#71 opened Oct 29, 2024 by stephenturner
@stephenturner
1
Input samplesheet with .meta operator instead of branch by size
#69 opened Oct 29, 2024 by chriswyatt1
GFFREAD fails
#61 opened Oct 28, 2024 by fperezcobos
Migrate to nf-schema enhancement New feature or request
#59 opened Oct 28, 2024 by FernandoDuarteF
Check schema_input.json enhancement New feature or request
#56 opened Oct 27, 2024 by FernandoDuarteF
@FernandoDuarteF
Pipeline fails when running on input_myco_tiny.csv dataset. bug Something isn't working
#55 opened Oct 25, 2024 by FernandoDuarteF
1
Check linting
#54 opened Oct 25, 2024 by FernandoDuarteF
Create tube map
#51 opened Oct 24, 2024 by FernandoDuarteF
1
Add a tree building method for genome only enhancement New feature or request
#49 opened Oct 24, 2024 by chriswyatt1
1
Add nf-test
#48 opened Oct 24, 2024 by chriswyatt1
Add ability to turn off specific modules
#46 opened Oct 24, 2024 by chriswyatt1
@chriswyatt1
1
Modules and tools ideas
#45 opened Oct 24, 2024 by FernandoDuarteF
5 of 20 tasks
Test genome only download runs from NCBI DOWNLOAD enhancement New feature or request
#44 opened Oct 24, 2024 by chriswyatt1
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