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Welcome to the Cytomining hackathon wiki!
We will use this wiki primarily to map out the steps in a typical morphological profiling data analysis workflow (from cell-level raw morphological data to well-level profiles to interpretation/visualization/validation strategies and tools) as well as alternatives for each step. This will provide the structure for the event.
Cytomining Hackathon Participants (spring 2016): Aliaksei Vasilevich (de Boer) Allen Goodman (Carpenter) Anne Carpenter (Carpenter) Blake Borgeson (Borgeson) Csaba Molnar (Horvath) Florian Heigwer (Boutros) Harman Bansal (Sundaramurthy) Ian Smith (Subramanian) John Concannon (Ross) Joseph Barry (Huber) Joseph Nasser (Subramanian) Juan Caicedo (Carpenter) Lassi Paavolainen (Horvath) Markus Herrmann (Pelkmans) Mason Victors (Borgeson) Mathias Wawer (Clemons) Mohammad Rohban (Carpenter) Oren Kraus (Frey) Paul Clemons (Clemons) Paul Rees (Rees) Peng Qiu (Qiu) Roger Linington (Linington) Ryan Peckner (Jaffe) Sam Cooper (Bakal) Scott Warchal (Carragher) Shantanu Singh (Carpenter) Steffen Jaensch (J&J) Thouis Jones (Jones)
Implementing profiling workflows
- IA-Lab (AstraZeneca Cambridge)
- Bakal (Inst. Cancer Research London)
- Borgeson (Recursion)
- Boutros (German Cancer Research Center)
- Carpenter (Broad Imaging Platform)
- Carragher (U Edinburgh)
- Clemons (Broad Comp. Chem. Bio)
- de Boer (Maastricht U)
- Frey (U Toronto)
- Horvath (Hungarian Acad of Sciences)
- Huber (EMBL Heidelberg)
- Jaensch (Janssen)
- Jaffe (Broad Comp. Proteomics)
- Jones (Harvard)
- Linington (Simon Fraser U)
- Pelkmans (U Zurich)
- Qiu (Georgia Tech)
- Ross (Novartis High Throughput Biol.)
- Rees (Swansea U)
- Subramanian (Broad CMap)
- Sundaramurthy (Nat. Center for Biol. Sciences)