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Schedule
Shantanu Singh edited this page May 10, 2016
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Time | Description | Who |
---|---|---|
13:30 - 15:30 | Meet at Park Street Red line station. Look for Shantanu, Alison, and Mohammad (pictures here) | All invited, RSVP to [email protected] |
15:30 - 16:45 | Take the red line to Harvard Square for ice cream and walk through Harvard University campus | |
18:00 - | Dinner at John Harvard's in Harvard Square | All invited, RSVP to [email protected] |
Time | Description | Who |
---|---|---|
08:00 - 08:30 | Registration | - |
08:30 - 09:00 | Breakfast | - |
09:00 - 09:15 | Welcoming remarks | Anne Carpenter |
09:15 - 09:45 | Introductions and motivations | All participants |
09:45 - 11:15 | Overviews of typical profiling workflow | First batch of participants |
11:15 - 11:30 | Break | - |
11:30 | Lunch is served | - |
11:30 - 11:45 | Introduction to small-molecule profiling | Paul Clemons (guest speaker) |
11:50 - 12:05 | Connectivity Map: Analysis and Computational Challenges | Rajiv Narayan (guest speaker) |
12:10 - 12:25 | Proteomic Connectivity Maps | Jake Jaffe (guest speaker) |
12:25 - 13:00 | Break | - |
13:00 - 14:30 | Overviews of typical profiling workflow | Second batch of participants |
14:30 - 15:15 | Hack! (Plan TBD) | All participants |
15:15 - 15:30 | Some thoughts about visualizing high-throughput imaging data | Noam Shoresh (guest speaker) |
15:30 - 17:00 | Hack! (Plan TBD) | All participants |
18:00 - | Dinner at Area Four | All participants |
Time | Description | Who |
---|---|---|
08:00 - 08:45 | Breakfast at Clover | - |
09:15 - 09:35 | Cajal revisited : Mapping molecular expression to morphology in the mouse retina | Karthik Shekhar (guest speaker) |
09:35 - 12:00 | Hack! (Plan TBD) | All participants |
12:00 | Lunch is served | - |
15:15 - 17:00 | Hack! (Plan TBD) | All participants |
18:00 | Dinner at The Similians | All participants |
- 1 member from each group presents their typical profiling workflow
- 8 mins talk + 2 mins transition
- Prep:
- Prepare slides
- Update the workflow document with details and references
- Presentation not required if the workflow or algorithms need to remain confidential/proprietary
Implementing profiling workflows
- IA-Lab (AstraZeneca Cambridge)
- Bakal (Inst. Cancer Research London)
- Borgeson (Recursion)
- Boutros (German Cancer Research Center)
- Carpenter (Broad Imaging Platform)
- Carragher (U Edinburgh)
- Clemons (Broad Comp. Chem. Bio)
- de Boer (Maastricht U)
- Frey (U Toronto)
- Horvath (Hungarian Acad of Sciences)
- Huber (EMBL Heidelberg)
- Jaensch (Janssen)
- Jaffe (Broad Comp. Proteomics)
- Jones (Harvard)
- Linington (Simon Fraser U)
- Pelkmans (U Zurich)
- Qiu (Georgia Tech)
- Ross (Novartis High Throughput Biol.)
- Rees (Swansea U)
- Subramanian (Broad CMap)
- Sundaramurthy (Nat. Center for Biol. Sciences)