nf-core
Change the repository type filter
All
Repositories list
146 repositories
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
- Longread PacBio sequencing processing for WGS and PureTarget
genomeqc
PublicCompare the quality of multiple genomes, along with their annotations.- A single-cell RNAseq pipeline for 10X genomics data
- An analysis pipeline for Nanostring nCounter expression data.
marsseq
PublicMARS-seq v2 pre-processing pipeline with velocitydifferentialabundance
Publicconfigs
PublicConfig files used to define parameters specific to compute environments at different Institutionsphaseimpute
PublicA bioinformatics pipeline to phase and impute genetic datatest-datasets
Publiceager
PublicA fully reproducible and state-of-the-art ancient DNA analysis pipeline- Pipeline for testing drug response prediction models in a statistically and biologically sound way.
demultiplex
PublicDemultiplexing pipeline for sequencing datavariantbenchmarking
Public- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq